Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1216 ATGGGTGAAGAGGATGCCAAGGGAGGACCAGTGATTCCAGAGTCTGTGCTGAAGAAACAGAAGAGGAATGAGGAATGGACATTGGCAAAGAAGCAAGAGGTTGAGGCGAAAAAGAAGAAGAATGCTGATAATCGGAAACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTTGAGACAGATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGGTACCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCATTTAAACTGAAGGCACCATTGGGTGGTTTGAAGAAGAAGAGGAATCACTATGTTGAAGGAGGAGATGCTGGAAACCGTGAAAATTACATCAATGAGCTCATTAGAAGAATGAACTAG 741 0.4305 MGEEDAKGGPVIPESVLKKQKRNEEWTLAKKQEVEAKKKKNADNRKLIYSRAKQYAKEYEEQQKELIQLKREAKLKGGFYVDPEAKLLFMIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIVEQALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1216 246 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Vvi9g1216 246 NCBIfam 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vvi9g1216 246 Gene3D - 87 189 IPR036919 -
Vvi9g1216 246 Gene3D - 190 246 IPR036919 -
Vvi9g1216 246 FunFam 60S ribosomal protein L7 192 246 - -
Vvi9g1216 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Vvi9g1216 246 FunFam 60S ribosomal protein L7 87 191 - -
Vvi9g1216 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Vvi9g1216 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Vvi9g1216 246 Coils Coil 49 76 - -
Vvi9g1216 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Vvi9g1216 246 PANTHER 60S RIBOSOMAL PROTEIN L7 11 246 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1216 Vvi-Chr9 20163271 20165265 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1216 5 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.298 8.01e-155 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1216 K02937 - vvi:100245039 463.766