Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1214 ATGATTAAATCTCAGCCATCCAACCCAATATGGATTCGGTACCGTAGCATAACCCTTGTAATATTTTTGGTTTTAATTTTATTTTTCATTTTCTGCGATGAATCTGATTCCAGTAAAGAACCGCGAGGTGGCTCCGTTGAAGACCGGCGGCGCCATCTCTCGTGCGGCAGGCCAATCATGAACGGAAGTGGTGACATGGAGGCTGCATCTGCCTCTGGCGGTGGCATGGTCGGCGGCGATGAGGATGAGGTGGTGTATTTGGATCCCTTCAATATTGCTACCACCAAGAACGCTTCTGTGGAGACGCTGAAGCGATGGAGGCAAGCAGCACTCGTGCTCAATGCTTCTCGTCGATTTCGGTACACATTGGACTTAAGAAAGGAAGAAGAGAAAGAGCAAAGAAGAAGGATGATTAGAGCACATGCACAAGTCATAAGAGCGGCATTGCTTTTCAAATTGGCTGGGGAACAAGCAACAATAGTGTTGGGTACTACAGTATCACCACCAAGTCCAGTTGGTGATTATTTAATTGGAGTGGAACAGCTTGCTTCAATGACCAGAGATCATAATTTTTCTGCTCTGCAAGAATATGGAGGGGCAAGATTATCGGATTTATTAGAAACAAATCTAGAGAAAGGAACTGATGGGGATGATGCTAGTCTATCAAAAAGAAGAAACATGTTTGGATCAAATACATATCCTCAGAAAAAAGGGCGGAGTTTCTTGATGTTCCTTTGGGAAGCTTGGCAAGATTTAACCCTTATCATCTTGATTGTAGCTGCAGCAGCATCATTGGCTTTAGGAATAAAAACTGAGGGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGCAATTAGTGATTACCGACAGTCCCTGCAATTTCAAAATTTAAATGAGGAAAAACGAAATATACATTTAAAGGTCATTAGAGGTGGCAGACCCGTGGAGATATCAATATTTGATATTGTTGTTGGTGATGTTGTACCTTTAAGCATAGGTGACCAGGTCCCTGCAGATGGAATCTTAATTACTGGTCATTCTCTTGCAATTGATGAATCTAGCATGACTGGTGAAAGCAAGATTGTTCACAAGGATCATAAGGCACCCTTTTTGATGTCTGGTTGCAAAGTGGCAGATGGTGTTGGTACTATGCTGGTAACTGGTGTGGGAATCAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGTGAAGAAACCCCCTTGCAGGTACGCTTGAATGGGGTTGCAACTTTTATAGGCATAGTTGGGCTTGCAGTTGCTGTTTCTGTACTGGCTGTCCTTTTGATAAGATACTTTACTGGACATACGAGAGATTCAGATGGAACAGTCCAATTTAAAAGTGGTGTTACGAGTTTTGGTGATGCTGTAGATGATGTCATTAAAATCATTACAATTGCAGTCACCATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACCCTAGCATACTCCATGCGAAAGATGATGGCAGATAAGGCTTTGGCATGTGTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGATGACTGTGGTTGAGGCTTATGTAGGGAGAAAGAAGATAGATCCACCAGATGACTCCTCACAGTTGCATCCAGATGTTTCATCTCTGCTACATGAGGGCATTGCCTGCAATACCCAGGGCAATGTTTTTGTGCCTAAGGGTGGTGGAGAAGAAAAAATGGAAATTTCTGGATCTCCTACAGAAAAGGCTATCCTTGCTTGGGCAGTCAAGTTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACAGGGTGACAATAAAGTTCATATACATTGGAAGGGAGCAGCTGAGATGGTACTAGGCTCCTGTACGGAATATCTTGACTCAAATGGTTGTTTGCAGCCCATGGGTGAAGATAAGGAGTTCTTCAGTGAAGCTATTAATCAAATGGCTGCAAGCAGCTTGCGCTGTGTTGCAATTGCATACAGAACATTTGACTTGGACAAAATGCCAATTGATGAGGAGCAACGAGACCAATGGGTTTTGCCTGAAAATGACCTTGTTTTGCTTTCTATTGTTGGTATAAAGGATCCTTGTCGTTCAGGTGTCCAAAATGCTGTGAGAATTTGCACGAATGCTGGTGTTAAGGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCATAGAAGGAAGAGCATTCCGTGTATTATCTGAGAGAGAAAGAGAACAAGTTGCCAAGAAAATATTGGTGATGGGAAGATCTTCTCCTAATGATAAACTTCTCCTTGTGCAAGCGCTACGCAAGGCTGGTGAGGTTGTTGCCGTAACAGGAGATGGCACTAATGATGCTCCTGCACTTCATGAGGCAGATATAGGTCTCTCTATGGGCATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGACATCATTATCTTGGATGATAACTTTGCCTCAGTTGTAAAGGTTGTTCGCTGGGGGCGTTCTGTCTATGCAAATATTCAAAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGCTTCTATGGGTTAACCTTATCATGGATACTCTTGGAGCACTTGCATTGGCTACTGAACCACCAACTGATCATCTTATGGAAAGATCTCCAGTTGGTCGAAGAGAACCTCTTATTACAAATATCATGTGGAGGAACCTAATCATTCAGGCTCTTTATCAAGTCAGTGTCCTCCTTGTCCTCAACTTCTGCGGTATAAGTATTCTTCATTTGAAGGATGAAACCAGGAAGCATGCAACTCAAGTGAAGAATAGTATGATATTCAACTCATTTGTCCTATGCCAAATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACTGGAGTGACTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGTTGGAAATTATGGATGGTTTCTTTGGCAATTGGCCTTGTCAGCTGGCCTCTGGCCATCATTGGGAAACTCATTCCAGTTCCTGAGACTCCCTTTGCCAAGTTCTTCACTAAGCCATTTCAGCAAAGGAGAGCGGGTCATTGGGCTTAG 3408 0.424 MIKSQPSNPIWIRYRSITLVIFLVLILFFIFCDESDSSKEPRGGSVEDRRRHLSCGRPIMNGSGDMEAASASGGGMVGGDEDEVVYLDPFNIATTKNASVETLKRWRQAALVLNASRRFRYTLDLRKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQATIVLGTTVSPPSPVGDYLIGVEQLASMTRDHNFSALQEYGGARLSDLLETNLEKGTDGDDASLSKRRNMFGSNTYPQKKGRSFLMFLWEAWQDLTLIILIVAAAASLALGIKTEGVKEGWYDGGSIAFAVFLVIFVTAISDYRQSLQFQNLNEEKRNIHLKVIRGGRPVEISIFDIVVGDVVPLSIGDQVPADGILITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAVLLIRYFTGHTRDSDGTVQFKSGVTSFGDAVDDVIKIITIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALACVRRLSACETMGSATTICSDKTGTLTLNKMTVVEAYVGRKKIDPPDDSSQLHPDVSSLLHEGIACNTQGNVFVPKGGGEEKMEISGSPTEKAILAWAVKLGMKFDVIREESSILHVFPFNSEKKRGGVAVQGDNKVHIHWKGAAEMVLGSCTEYLDSNGCLQPMGEDKEFFSEAINQMAASSLRCVAIAYRTFDLDKMPIDEEQRDQWVLPENDLVLLSIVGIKDPCRSGVQNAVRICTNAGVKVRMITGDNLQTAKAIALECGILPSEADATEPNIIEGRAFRVLSEREREQVAKKILVMGRSSPNDKLLLVQALRKAGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVASVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMERSPVGRREPLITNIMWRNLIIQALYQVSVLLVLNFCGISILHLKDETRKHATQVKNSMIFNSFVLCQIFNEFNARKPDEINVFTGVTKNYLFMGIIGITFALQIIIIEFLGKFTSTVKLSWKLWMVSLAIGLVSWPLAIIGKLIPVPETPFAKFFTKPFQQRRAGHWA* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1214 1135 FunFam Calcium-transporting ATPase 98 154 - -
Vvi9g1214 1135 PRINTS P-type cation-transporting ATPase superfamily signature 363 377 - -
Vvi9g1214 1135 PRINTS P-type cation-transporting ATPase superfamily signature 742 753 - -
Vvi9g1214 1135 PRINTS P-type cation-transporting ATPase superfamily signature 849 868 - -
Vvi9g1214 1135 PRINTS P-type cation-transporting ATPase superfamily signature 541 555 - -
Vvi9g1214 1135 PRINTS P-type cation-transporting ATPase superfamily signature 873 885 - -
Vvi9g1214 1135 PRINTS P-type cation-transporting ATPase superfamily signature 764 774 - -
Vvi9g1214 1135 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 548 746 IPR023299 GO:0000166
Vvi9g1214 1135 Pfam Cation transporter/ATPase, N-terminus 202 264 IPR004014 -
Vvi9g1214 1135 CDD P-type_ATPase_Ca_PMCA-like 221 982 - -
Vvi9g1214 1135 NCBIfam calcium-translocating P-type ATPase, PMCA-type 192 1113 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi9g1214 1135 Gene3D - 538 894 IPR023214 -
Vvi9g1214 1135 Pfam Cation transporting ATPase, C-terminus 934 1111 IPR006068 -
Vvi9g1214 1135 Pfam haloacid dehalogenase-like hydrolase 538 863 - -
Vvi9g1214 1135 Gene3D - 98 153 - -
Vvi9g1214 1135 SFLD p-type atpase 524 901 IPR044492 -
Vvi9g1214 1135 SUPERFAMILY Calcium ATPase, transduction domain A 317 412 IPR008250 -
Vvi9g1214 1135 FunFam Calcium-transporting ATPase 742 894 - -
Vvi9g1214 1135 SUPERFAMILY HAD-like 539 954 IPR036412 -
Vvi9g1214 1135 FunFam Calcium-transporting ATPase 247 304 - -
Vvi9g1214 1135 FunFam Calcium-transporting ATPase 9 plasma membrane-type 393 565 - -
Vvi9g1214 1135 FunFam Calcium-transporting ATPase 294 415 - -
Vvi9g1214 1135 ProSitePatterns E1-E2 ATPases phosphorylation site. 543 549 IPR018303 -
Vvi9g1214 1135 SUPERFAMILY Calcium ATPase, transmembrane domain M 201 1113 IPR023298 -
Vvi9g1214 1135 FunFam Calcium-transporting ATPase 551 749 - -
Vvi9g1214 1135 SFLD Haloacid Dehalogenase 524 901 - -
Vvi9g1214 1135 Pfam Ca2+-ATPase N terminal autoinhibitory domain 88 130 IPR024750 GO:0005516
Vvi9g1214 1135 Gene3D - 220 415 - -
Vvi9g1214 1135 SMART Cation_ATPase_N_a_2 190 269 IPR004014 -
Vvi9g1214 1135 Gene3D - 247 1102 - -
Vvi9g1214 1135 NCBIfam HAD-IC family P-type ATPase 816 929 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi9g1214 1135 NCBIfam HAD-IC family P-type ATPase 473 570 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi9g1214 1135 PANTHER CATION TRANSPORTING ATPASE 159 1113 - -
Vvi9g1214 1135 Gene3D - 551 749 IPR023299 GO:0000166
Vvi9g1214 1135 Pfam E1-E2 ATPase 317 517 - -
Vvi9g1214 1135 FunFam Calcium-transporting ATPase 866 1115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1214 Vvi-Chr9 20056605 20128216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1214 65 1135 Primary Pumps ATPases AT3G21180 74.744 0.0 1605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1214 K01537 - vvi:100253521 1977.6