Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1211 ATGGACGACGTTTCCGGGAATGATCAGGTTGCTGCTGACAACCCACCAAGGAAGAAGAGATACCACCGACACGCTCTTCAGCAAATCCAAGAATTTGAAGCACTGCTCCAGGAGTGTCTTCATCCTGGTGAAAAGCAAGGGTTGAGACTCCGCAAAAGGCTTTGCTTGGAGACCAGGCAAGTGAAGTTCTGGTTCCAAAATCGTCGCACTCCTTGTTATTCCAGTTCTTGGTGA 234 0.4915 MDDVSGNDQVAADNPPRKKRYHRHALQQIQEFEALLQECLHPGEKQGLRLRKRLCLETRQVKFWFQNRRTPCYSSSW* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1211 77 MobiDBLite consensus disorder prediction 1 21 - -
Vvi9g1211 77 CDD homeodomain 18 69 IPR001356 GO:0003677
Vvi9g1211 77 Pfam Homeodomain 18 70 IPR001356 GO:0003677
Vvi9g1211 77 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Vvi9g1211 77 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 71 IPR042160 -
Vvi9g1211 77 SUPERFAMILY Homeodomain-like 6 70 IPR009057 -
Vvi9g1211 77 SMART HOX_1 16 75 IPR001356 GO:0003677
Vvi9g1211 77 Gene3D - 4 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1211 Vvi-Chr9 20020353 20020586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1211 1 70 Homeobox Transcription Factor Family AT4G00730 72.857 9.29e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi9g1211 Homeodomain 4.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1211 K09338 - rcu:8258519 118.627