Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1185 ATGTCAGATGTGGTCTTAATAGCCATTGAAGTGGTTGAAGAGTGTGGTAGATTTAATAGGGAAATGGGTTCCATTGAGGAGAAGATAGACCTTGAATCAGATGAGGAGATCCCTTTTAGCACATCACAAGGCACAAGAAAAGTTCATTCTTTTGACTTCGAGACATCTCATATTGGGTCTCATGCAGCTCTCTCCACCTCATGGATCTTTAAAAAAATGAGGACTGCTCCTCTAAGAAGTGTTTACATTGTCTTGATTAAAGCGAAGATAAATATGTTGCTACCTTTTGGTCCCTTAGCAATTTTCCTACATTATCTTACTGGAAAGCATGGATGGGTCTTCTTCTTCAGCTTATTAGGTATTACCCCTTTAGCCGAGCGTTTGGGTTTTGCCACCGAGCAGCTTGCATTCTACACAGGCGCTACAGTTGGGGGTCTTCTAAATGCTACCTTTGGCAATGCGACAGAAATGATAATTTCAATGTATGCATTGAAGCATGGGATGATAAGAGTTGTTCAGCAATCATTATTGGGCTCCATCTTGTCAAACATGCTTTTGGTTCTTGGATGCGCATTCTTCACTGGCGGGATAAAAAATCACACAAAAGTTCAGGAGTTCAATAAGGCAGCTGCCTTGGTGAACTCAGGATTATTGCTTATGGCTGTTATGGGTTTAATGTTTCCAGCGGTGCTTCACTTCACACACACAGAGGTGCACTTTGGGAAATCAGAATTAGCTCTTTCAAGATTTAGCAGCTGTATAATGCTTGTGGCATACGCCAGCTACCTTTTCTTTCAGCTTAAAAGTCAACCGAATCTTTATAGTCCCATTGATGAGGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACTCAATGGGAAGCAATTAGCTGGCTTGCTATTCTCACTCTATGGGTGTCTGTACTCTCTGGATACCTTGTTGATGCTATAGAGGGAGCATCTGAGTCATTAAACATGCCAGTGGCTTTTATTAGTGTCATTCTGCTTCCAATTGTAGGAAATGCTGCTGAGCATGCCAGTGCAATTATGTTTGCCATAAAGAACAAGCTTGACATCACAATCGGAGTTGCAATTGGTTCATCTACACAAATAGCAATGTTTGTGATTCCCTTCTGTGTGGTTGTTGGTTGGATTATGGGACAACCAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACTCTCTTTATCGCGGTGCTAGTAGTGGCATTTATGTTGCAGGAAGGGACATCAAACTATTTTAAAGGTTTGATGCTTATTCTATGCTATCTCATAGTTGCAGCCAGCTTTTTTGTACATGTTGACCCTACAAAGGATAATGATTAA 1362 0.4075 MSDVVLIAIEVVEECGRFNREMGSIEEKIDLESDEEIPFSTSQGTRKVHSFDFETSHIGSHAALSTSWIFKKMRTAPLRSVYIVLIKAKINMLLPFGPLAIFLHYLTGKHGWVFFFSLLGITPLAERLGFATEQLAFYTGATVGGLLNATFGNATEMIISMYALKHGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIKNHTKVQEFNKAAALVNSGLLLMAVMGLMFPAVLHFTHTEVHFGKSELALSRFSSCIMLVAYASYLFFQLKSQPNLYSPIDEDTEKIEEDSDEDIPELTQWEAISWLAILTLWVSVLSGYLVDAIEGASESLNMPVAFISVILLPIVGNAAEHASAIMFAIKNKLDITIGVAIGSSTQIAMFVIPFCVVVGWIMGQPMDLNFQLFETATLFIAVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPTKDND* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1185 453 NCBIfam calcium/proton exchanger 93 443 IPR004798 GO:0006816|GO:0015369
Vvi9g1185 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 43 448 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vvi9g1185 453 Pfam Sodium/calcium exchanger protein 112 267 IPR004837 GO:0016020|GO:0055085
Vvi9g1185 453 Pfam Sodium/calcium exchanger protein 303 440 IPR004837 GO:0016020|GO:0055085
Vvi9g1185 453 Gene3D - 289 444 IPR044880 -
Vvi9g1185 453 Gene3D - 140 284 IPR044880 -
Vvi9g1185 453 FunFam Vacuolar cation/proton exchanger 141 280 - -
Vvi9g1185 453 FunFam Vacuolar cation/proton exchanger 287 444 - -
Vvi9g1185 453 NCBIfam calcium/proton exchanger 84 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1185 Vvi-Chr9 19317737 19328801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1185 21 452 Antiporters AT1G55730 68.822 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1185 K07300 - vvi:100253555 848.58