Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1183 ATGAAGCCGAATCAACCCCCTACCGCCGCCGCCTCCTCCTCAGCCGCCAATACCCGGATTCGGCCTCGACGGCGGCCCGACCTCACGCTTCCTCTCCCGCAGCGGGATCCTTCCCTTGCCGTGCCGCTTCCTCTTCCGCCGACGTCGGCTCAGTCTTCGTCCTCCGGAGGGGCGGCGGCGGCGGCGACGCCAGCGTTCTCGGAGCTGGAGAGAATCAACAGAATCGGAAGCGGTAGCGGCGGCACCGTGTACAAGGTCCTCCACAGGCCGACGGGGAGGTTGTACGCCTTGAAGGTGATCTACGGAAACCACGACGACGACGTGCTCCGCCAGATCTGTCGAGAAATCGAGATCCTCAGAGATGTGGATAACCCCAACGTGGTGAAGTGCCACGACATGTACGACCACGCCGGCGAAATCCAGGTGTTGCTGGAGCACATGGACGGTGGATCTCTTGAGGGGACTCACATCGCGGACGAGCTCGCTCTCTCCGATCTCGCGTTTCAGATCCTCTCCGGCCTCCACTACCTCCATCGCCGGAAAATCGTGCACCGCGACATCAAACCTTCGAACCTCCTAATCAACGCCAGGCGACAAGTGAAGATCGCCGACTTCGGTGTGAGCCGGATCTTGGCTCAGACCATGGATCCGTGTAACTCATCGGTGGGAACGATCGCGTACATGAGTCCGGAGCGGATCAACACCGATCTCAACCACGGCAGATACGACGGCTACGCTGGCGACATCTGGAGCCTCGGTGTGAGCATCTTGGAGTTTTATTTAGGGCGTTTCCCGTTTGCTGTCGGCCGGCAAGGGGATTGGGCGAGTTTGATGTGCGCAATCTGTATGTCGCAGCCGCCGGAGGCGCCAGTCACTGCATCAAGGGAGTTTAGGGACTTCATATCACGGTGTCTGCAGAGGGATCCGGCGGTCCGGTGGTCGGCAGACAAACTTCTCCGGCACCCCTTTGTGCTTCAGAGTCAGAGAAGAAGAGGACAGAGTCAAAGCCAGGTTCATCATCCTCCCCAGCTTCTTCCTCCTCCACGCCTGCATTCCTCGACGAGGCCAACTGGGTCTGTTAGAGTTCAAGCCTATGAATCAATGTCGTCTCCAGATGGTGTTTTACCAGGACAAAGGAAAATTGTCTTTCATGATTGCCCTCATCTTTCCCTTTTCCTCTACAAATTGATTCTTTTTTTCCCACTTAAAGGACAAAAAGCTAACCATAGAATGTTACATATGGGGATGAGAGAAATCCAGTAG 1263 0.5677 MKPNQPPTAAASSSAANTRIRPRRRPDLTLPLPQRDPSLAVPLPLPPTSAQSSSSGGAAAAATPAFSELERINRIGSGSGGTVYKVLHRPTGRLYALKVIYGNHDDDVLRQICREIEILRDVDNPNVVKCHDMYDHAGEIQVLLEHMDGGSLEGTHIADELALSDLAFQILSGLHYLHRRKIVHRDIKPSNLLINARRQVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGRYDGYAGDIWSLGVSILEFYLGRFPFAVGRQGDWASLMCAICMSQPPEAPVTASREFRDFISRCLQRDPAVRWSADKLLRHPFVLQSQRRRGQSQSQVHHPPQLLPPPRLHSSTRPTGSVRVQAYESMSSPDGVLPGQRKIVFHDCPHLSLFLYKLILFFPLKGQKANHRMLHMGMREIQ* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1183 420 FunFam Mitogen-activated protein kinase 2 149 336 - -
Vvi9g1183 420 MobiDBLite consensus disorder prediction 45 60 - -
Vvi9g1183 420 FunFam Mitogen-activated protein kinase 2 50 148 - -
Vvi9g1183 420 SUPERFAMILY Protein kinase-like (PK-like) 67 367 IPR011009 -
Vvi9g1183 420 CDD PKc_MAPKK_plant_like 67 324 - -
Vvi9g1183 420 ProSiteProfiles Protein kinase domain profile. 69 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1183 420 SMART serkin_6 69 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1183 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Vvi9g1183 420 MobiDBLite consensus disorder prediction 1 19 - -
Vvi9g1183 420 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 32 328 - -
Vvi9g1183 420 Gene3D Phosphorylase Kinase; domain 1 50 148 - -
Vvi9g1183 420 Pfam Protein kinase domain 70 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1183 420 MobiDBLite consensus disorder prediction 1 62 - -
Vvi9g1183 420 MobiDBLite consensus disorder prediction 328 356 - -
Vvi9g1183 420 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vvi9g1183 420 Gene3D Transferase(Phosphotransferase) domain 1 151 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1183 Vvi-Chr9 19258104 19263704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1183 1 349 MAP Kinase Kinase Gene Family AT3G21220 71.751 1.60e-169 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vvi9g1183 Pkinase 5.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1183 K13413 - vvi:100258699 640.958