Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1174 ATGACTTCGACCTCTGCTTCATCATCTTCTTCTTCTTCATCCTCCCAATTCACATACTCAAATGCTTCTTATTTTCCTCTGCCCTTTCACCTTCAACAGTCCGGTCCAATGGCTGTTTCTCAGTACCCTCAGCCCTATGTTGCCCCTTCTCCACCGCCTGTCCATGTACCTGTGCCACCGGTCAAGATTTCAACCATTGCTCCTGTATACCCAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTTGAGAGTGTAAAAGCTGCTCTTGCTAGCAGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGAGAGGACAGATTCTGAAGCCTTGGAAAGACAAAAGAACCATATCCAAAAGAAACCAAAGCTTTCAAAGAAGAGCATATTGCATAAGTGA 774 0.4535 MTSTSASSSSSSSSSQFTYSNASYFPLPFHLQQSGPMAVSQYPQPYVAPSPPPVHVPVPPVKISTIAPVYPASAPGAGVYSLPQYQQAHQLFQRDAQTITPEALESVKAALASSEIEHKAETKKRAIPRKVAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTRGFGFVSFSNPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDSEALERQKNHIQKKPKLSKKSILHK* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1174 257 MobiDBLite consensus disorder prediction 225 243 - -
Vvi9g1174 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 221 IPR000504 GO:0003723
Vvi9g1174 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 227 IPR000504 GO:0003723
Vvi9g1174 257 FunFam RNA-binding protein 42 84 234 - -
Vvi9g1174 257 Gene3D - 84 223 IPR012677 -
Vvi9g1174 257 MobiDBLite consensus disorder prediction 225 257 - -
Vvi9g1174 257 CDD RRM_RBM42 143 225 IPR034215 -
Vvi9g1174 257 SMART rrm1_1 150 223 IPR000504 GO:0003723
Vvi9g1174 257 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 78 234 - -
Vvi9g1174 257 SUPERFAMILY RNA-binding domain, RBD 130 229 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1174 Vvi-Chr9 19021775 19038306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1174 151 251 Eukaryotic Initiation Factors Gene Family AT1G71770 28.713 2.75e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1174 K25079 - vvi:100241581 462.225