Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1168 ATGATGTTATCGGCATATCAAGAGGAGCTCAAAGAAATGGAAGGACAATCCAAAGAAGAATATATCGGATCTTTGAGGAGAAAAAGTAGTGGGTTTTCTCGAGGGGTGTCAAAATACAGAGGCGTAGCCAGGCACCATCATAATGGAAGATGGGAGGCTAGAATTGGAAGAGTTTTTGGCAACAAATATCTTTACCTTGGAACCTATGCCACCCAGGAGGAGGCAGCAACTGCATATGACATGGCAGCTATAGAGTACAGAGGACTTAATGCTGTGACCAACTTTGACCTCAGCCGTTACATCAAGTGGCTTAGACCTAACCAAAGTGATAGTGTTGGCTCCATGCAAAACCCTAATGGCCAAAGCAGCCCAGCTCCAAACCCTAACCCAAGTGATCATGAGCTTGGCTTGAGCTTCCTCCAACAGCAGCATGGCTCGGATGCGACTGAGCTGCCTCTAAGCCATGCACGATCGGGTGCCGGTGGTAGTGGCAGTGGTGGTGGTGGTGGTGGTGCATCATCTGCACTTGGGCTTTTGTTACAGTCATCAAAATTCAAGGAAATGTTAGAGAGAACATCAACTGCAGACTGCCCATTGACTCCTCCAGATCAGATCGAGATGCCCAGGAGTAGCTTTCCAGATGACATTCAGACTTACTTTGATTGTCAGGAGACGAACAGCTATGGCGAGAGTGATGATATTATTTTTGGCGACTTGAAGTACTTCTCTTCCCCTATGTTCCAGTGCGAGCTTGACACATAA 762 0.4711 MMLSAYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLRPNQSDSVGSMQNPNGQSSPAPNPNPSDHELGLSFLQQQHGSDATELPLSHARSGAGGSGSGGGGGGASSALGLLLQSSKFKEMLERTSTADCPLTPPDQIEMPRSSFPDDIQTYFDCQETNSYGESDDIIFGDLKYFSSPMFQCELDT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1168 253 MobiDBLite consensus disorder prediction 109 173 - -
Vvi9g1168 253 CDD AP2 37 98 IPR001471 GO:0003700|GO:0006355
Vvi9g1168 253 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 158 - -
Vvi9g1168 253 Pfam AP2 domain 37 88 IPR001471 GO:0003700|GO:0006355
Vvi9g1168 253 ProSiteProfiles AP2/ERF domain profile. 38 96 IPR001471 GO:0003700|GO:0006355
Vvi9g1168 253 SMART rav1_2 38 102 IPR001471 GO:0003700|GO:0006355
Vvi9g1168 253 MobiDBLite consensus disorder prediction 109 149 - -
Vvi9g1168 253 FunFam AP2-like ethylene-responsive transcription factor 37 98 - -
Vvi9g1168 253 Gene3D AP2/ERF domain 37 98 IPR036955 GO:0003700|GO:0006355
Vvi9g1168 253 SUPERFAMILY DNA-binding domain 37 98 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1168 Vvi-Chr9 18938717 18941243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1168 3 252 AP2-EREBP Transcription Factor Family AT1G79700 51.394 5.52e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi9g1168 AP2 4.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1168 K09285 - vvi:100260401 471.47