Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1167 ATGGCTGGCTTCAAGAAATCTCCATACAATTCACTCTATGTCAACCCCCTCAATGATCTCAAGCATATAAGGAGCTGCAGTGAGGGTGACAAAGAAAATGCAGCCCCAAAAGCCAAAGAAAATGGCAATGCACCACCACCCACCAAGCAGTTTCCATACACAAAGTGCTCCTCCACCACCACCAGGGTCCCCCTGAAGCCATCTTCACTGCAGCTATGCATGCAGCTCAATGAGCCTGATTCAACTTTAGGGTCCAAAGTGTGGTGCCCCATCAGCTCAGAGCCCTTCACTTCCTCCCATGTTTGGGACTATTCAGATTCTGAGGCTGCCCCAGCTTCTTCCTGGTCTACACTGCCCAATAGGTCCTTGCTGTGTAGGCCTTTGCCTTTGGACATTGGGAGATGCACCTGTGTCATCGTGAAGGAGGCATTACCACAAGGGTTGGATGGGGGTGCTCTGTATTCACTTTACACCAATGAAGGCCAAGGGCGACAAGATAGAAAACTAGCTATTGCACATCATAAACGGCGTAATGGAAAGTCTGAGTTCATTGTAGCTCAGAGTGTAAAGGGGATATTATGCAACTCAGATGATAGCTTCATTGGGATAGTAACAGCCAACCTCCTTGGTTCAAAATACCACATATGGGATCAGGGGACTTGCCTCAATTCTGTAGCAAAGCGGTCTAAACCTCTTTTGGCTGTTGTAACATTCATGCCTACAATAGCCACCTTGACAGGAAGTTACAGAAACATACGGGCATGGATACCAAAGCACCAGTCTATGCAGCTGAAGAACTCAACTCAGATACAACATATTAATGGACTGCCCAACGACTGGGAGAGCAAAAAGGACAAAGTTCACCAGCTATTCTCGAGGGTTCCTCATTATAATAGTGTAAGTACAAATATGAAGTGCTTCTTCCTGAATAAATGA 936 0.4637 MAGFKKSPYNSLYVNPLNDLKHIRSCSEGDKENAAPKAKENGNAPPPTKQFPYTKCSSTTTRVPLKPSSLQLCMQLNEPDSTLGSKVWCPISSEPFTSSHVWDYSDSEAAPASSWSTLPNRSLLCRPLPLDIGRCTCVIVKEALPQGLDGGALYSLYTNEGQGRQDRKLAIAHHKRRNGKSEFIVAQSVKGILCNSDDSFIGIVTANLLGSKYHIWDQGTCLNSVAKRSKPLLAVVTFMPTIATLTGSYRNIRAWIPKHQSMQLKNSTQIQHINGLPNDWESKKDKVHQLFSRVPHYNSVSTNMKCFFLNK* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1167 311 Gene3D Tubby Protein; Chain A 120 310 IPR025659 -
Vvi9g1167 311 SUPERFAMILY Tubby C-terminal domain-like 112 301 IPR025659 -
Vvi9g1167 311 Pfam Tub family 125 310 IPR000007 -
Vvi9g1167 311 PANTHER TUBBY-RELATED 96 299 - -
Vvi9g1167 311 MobiDBLite consensus disorder prediction 28 56 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1167 42 270 TUB Transcription Factor Family AT1G16070 61.039 1.01e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi9g1167 Tub 2.9e-14 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1167 K19600 - vvi:100248428 625.165