Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1152 ATGGTTTCAGCCTCACTGGGAAGGAACAACTTCTCAGGCAATCTTCCACCAAACTTTGCCTCTCATCTTCCCAATCTTGACGAACTTCTACTGGGAATTAATAGGCTTAGTGGTATTATTCCTAGCTCCATCAGCAATGCTTCTAAGCTTACGAGGCTGGATGTTGGTGGTAACGCATTCACTGGATCCATACCTCATACACTTGGGAGTATAAGATTCCTTGAGAACCTGCATCTAGGAGGTAATAATCTGACAGGTGAATCTTCTATCCAAGAATTGAGTTTTCTCACTTCATTGACAAACTGCAAGTGGCTGAGCACATTGGACATTACATTGAATCCTCTAAGTGGCATCCTTCCTACTTCTATTGGGAATCTCTCTACCTCTCTTGAACGTTTTCGAGCCAGCGCATGCAATCTCAAGGGCAACATCCCTACTGAAATTGGAAATTTAGGTAGCCTTTATCTGTTATTCCTGGACCACAATGACTTAATTGGAACTATTCCCCCGTCAATTGGACAATTACAGAAGCTCCAAGGTTTGCATCTTTCTGACAATAAACTACAAGGTTTCATCCCAAACGATATTTGTCAGCTAAGGAATTTAGTTGAGTTATTTTTGGAAAATAATCAGCTCTCTGGATCCATACCAGCATGCTTGGGTGAACTTACTTTTCTAAGACAAGTCGACTTGGGCTCCAACAAACTAAATTCCACAATACCTTTGACTTTGTGGAGCCTGAAGGATATCTTGACTTTAGACTTGTCCTCAAATTTTCTAGTTAGCTATCTACCGTCAGATATGGGAAATTTAAAGGTTCTGGTAAAAATAGATTTGTCAAGGAATCAATTGTCATGTGAAATTCCAAGTAACGCTGTAGACCTCCGAGATTTAATTTCTCTCTCCTTGGCTCATAATAGATTTGAAGGCCCCATATTGCACTCATTTAGCAATTTGAAGAGCTTGGAGTTCATGGATCTATCCGACAATGCTCTATCTGGAGAAATACCGAAATCGTTAGAGGGATTAGTGTATCTAAAATATCTAAATGTGTCTTTCAATAGACTATATGGAGAGATCCCCACTGAAGGGCCTTTTGCAAACTTCTCAGCCGAATCTTTTATGATGAACGAGGCACTGTGTGGTTCACCAAGGCTGAAACTCCCACCCTGCAGAACTGGCACTCATCGTCCATTAGAAAAACAGACCCTTGCAACCTTAGGGTACATGGCACCAGAGTATGGTTCCAATGGAATAGTTACCACTAGTGGTGATGTCTATAGTTATGGTATCGTGTTAATGGAGACGTTTACAAGGAGAAGGCCTACAGATGAAATTTTTTCTGAAGAATTGGGTGTCTTTCTCCTCTCTAGTACTATTATTTCGGTGTTTATAGTGCAATTCAGTGCTTGTGTAGCCATGTCTTTGAGCAATTTTACTGATCAATCTTCACTACTTGCTTTGAAAGCCCATATCACACTCGATCCACACCATGTATTAGCAGGTAACTGGTCCACTAAAACCTCCTTCTGTGAGTGGATAGGAGTCTCTTGCAATGCTCAACAACAAAGAGTCATAGCCTTGGATCTTTCCAACTTGGGTCTGAGGGGAACCATCCCTCCAGACCTTGGAAACCTCTCCTTTCTAGTCTCTCTTGACCTTAGCAGCAACAATTTCCATGGTCCTGTACCTGTCGAGGTGGGTCAGTTGACTAGTTTGCTATCAATGAATCTGCAATACAATCTCCTTAGCGGACAGATACCACCCAGTTTTGGAAACTTAAACAGGCTTCAAAGCTTGTTTCTTGGAAATAATAGTTTTACTGGAACCATCCCTCCTTCCATTGGCAACATGTCAATGCTTGAAACTTTGGGTTTAGGGGGCAATCACCTGCAAGGAAACATTCCCGAAGAGATTGGTAAACTTTCGACTATGAAGATATTAGATATCCAGAGTAACCAGCTTGTGGGTGCAATTCCTTCGGCCATCTTCAACATCTCTTCTTTACAAGAAATTGCTCTAACCTACAATAGTCTATCTGGTACCATCCCTGAAGAAATAAGTTTTCTTCCTAGTTTGGAGTATTTGTACCTCAGGAGCAATAGCTTCACCAGTCCGATTCCATCAGCCATCTTCAAAATCTCCACTTTGAAGGCGATTGATCTTGGAAAAAACGGATTTTCTGGAAGTATGCCACTGGATATCATGTGTGCTCATCGTCCATCACTTCAACTAATCGGACTTGACAGTAATAGATTTACCGGAACCATACATGGAGGAATTGGAAATTGTACTTCACTGAGGGAACTATATTTGAGTAGTAACGACTTGACAGTTGATGGAGAAGCTGGTGAGGTTCTTAAAAACCAAGGGATCTTTCAACCACTGGCTCTCTTTCTTGGATTTAGGCACTTGAGGATGGTGAAATCCTCTCATAAGGGTGGAAGTCTCTCTGAATCCTCAGAAGATTGA 2472 0.415 MVSASLGRNNFSGNLPPNFASHLPNLDELLLGINRLSGIIPSSISNASKLTRLDVGGNAFTGSIPHTLGSIRFLENLHLGGNNLTGESSIQELSFLTSLTNCKWLSTLDITLNPLSGILPTSIGNLSTSLERFRASACNLKGNIPTEIGNLGSLYLLFLDHNDLIGTIPPSIGQLQKLQGLHLSDNKLQGFIPNDICQLRNLVELFLENNQLSGSIPACLGELTFLRQVDLGSNKLNSTIPLTLWSLKDILTLDLSSNFLVSYLPSDMGNLKVLVKIDLSRNQLSCEIPSNAVDLRDLISLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALSGEIPKSLEGLVYLKYLNVSFNRLYGEIPTEGPFANFSAESFMMNEALCGSPRLKLPPCRTGTHRPLEKQTLATLGYMAPEYGSNGIVTTSGDVYSYGIVLMETFTRRRPTDEIFSEELGVFLLSSTIISVFIVQFSACVAMSLSNFTDQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWIGVSCNAQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPVPVEVGQLTSLLSMNLQYNLLSGQIPPSFGNLNRLQSLFLGNNSFTGTIPPSIGNMSMLETLGLGGNHLQGNIPEEIGKLSTMKILDIQSNQLVGAIPSAIFNISSLQEIALTYNSLSGTIPEEISFLPSLEYLYLRSNSFTSPIPSAIFKISTLKAIDLGKNGFSGSMPLDIMCAHRPSLQLIGLDSNRFTGTIHGGIGNCTSLRELYLSSNDLTVDGEAGEVLKNQGIFQPLALFLGFRHLRMVKSSHKGGSLSESSED* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1152 823 SUPERFAMILY Protein kinase-like (PK-like) 402 458 IPR011009 -
Vvi9g1152 823 SUPERFAMILY RNI-like 5 362 - -
Vvi9g1152 823 Gene3D Transferase(Phosphotransferase) domain 1 390 475 - -
Vvi9g1152 823 FunFam Piriformospora indica-insensitive protein 2 638 733 - -
Vvi9g1152 823 Pfam Leucine Rich repeat 763 781 IPR001611 GO:0005515
Vvi9g1152 823 Gene3D Ribonuclease Inhibitor 634 736 IPR032675 -
Vvi9g1152 823 SUPERFAMILY L domain-like 486 778 - -
Vvi9g1152 823 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 88 - -
Vvi9g1152 823 SMART LRR_typ_2 319 343 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 594 617 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 151 175 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 199 222 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 618 642 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 271 295 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 570 593 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 690 714 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 23 46 IPR003591 -
Vvi9g1152 823 SMART LRR_typ_2 223 247 IPR003591 -
Vvi9g1152 823 Pfam Leucine rich repeat 644 702 IPR001611 GO:0005515
Vvi9g1152 823 Pfam Leucine rich repeat 298 356 IPR001611 GO:0005515
Vvi9g1152 823 Pfam Leucine rich repeat 24 84 IPR001611 GO:0005515
Vvi9g1152 823 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Vvi9g1152 823 PANTHER OS01G0149700 PROTEIN 742 778 - -
Vvi9g1152 823 Gene3D Ribonuclease Inhibitor 1 100 IPR032675 -
Vvi9g1152 823 FunFam Inactive leucine-rich repeat receptor-like protein kinase 97 391 - -
Vvi9g1152 823 Pfam Protein tyrosine and serine/threonine kinase 402 446 IPR001245 GO:0004672|GO:0006468
Vvi9g1152 823 Pfam Leucine rich repeat N-terminal domain 481 519 IPR013210 -
Vvi9g1152 823 Gene3D Ribonuclease Inhibitor 737 796 IPR032675 -
Vvi9g1152 823 Gene3D Ribonuclease Inhibitor 478 633 IPR032675 -
Vvi9g1152 823 Gene3D Ribonuclease Inhibitor 101 389 IPR032675 -
Vvi9g1152 823 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 478 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1152 Vvi-Chr9 18538279 18551588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1152 38 791 Receptor kinase-like Gene Family AT5G07280 31.314 1.10e-69 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi9g1152 LRR_8 4e-10 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1152 - K13420 vvi:100253643 787.719