Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1150 ATGTTCACCGGCTCTATACCTCATGCACTTGGGAGTTTAAGATTCCTTGAGAGACTCCATCTAGGAGCTAATAATTTGAAAGGTGAATCTTCTATCCAAGAATTGAGTTTTCTCACTTCATTGACAAACTGCAAGCGACTGAGAATTTTGTACTTATCATTCAATCCTCTAATCGGCATCCTTCCCATTTCTATTGGGAACCTCTCTACCTCTCTTCAACTTTTTGGAGCTAGTACATGCAAACTCAAGGGCAACATTCCTACTGAAATTGGAAATTTAAGTAACCTTTATCAGTTATCCTTGAACAACAATGACTTAACTGGAACTATTCCCCCGTCAATTGGACAATTACAGAAGCTCCAAGGTTTGTATCTTCCTGCCAATAAACTACAAGGTTCTATCCCAAATGATATTTGTCAGCTGAGGAACTTAGTTGAGTTATATTTGGCAAATAATCAGCTCTCTGGATCTATACCAGCATGCTTGGGTGAACTTGCTTTTCTAAGACATCTATACTTGGGGTCCAACAAACTGAATTCTACAATACCTTTGACTCTGTGGAGCTTGAACGATATCTTGTCTTTGGACATGTCCTCAAATTTTCTAGTTGGCTATCTACCATCAGATATGGGAAATTTAAAGGTTCTGGTAAAAATAGATTTGTCAAGGAATCAATTGTCAGGTGAAATTCCAAGTAACATTGGAGGCCTCCTAGATTTAACTTCTCTCTCTTTGGCTCATAATAGACTTGAAGGCCCCATATTGCACTCATTTAGCAATTTGAAGAGCTTGGAGTTCATGGATCTATCCGACAATGCTCTATCTGGAGAAATACCAAAATCGTTAGAAGGATTAGTGTATCTAAAATATCTTAATATGTCTTTCAATAGACTATATGGAGAAATCCCCACTGAAGGGCCTTTTGCAAACTTCTCAGCTGAATCTTTTATGATGAACAAGGCACTGTGTGGTTCACCAAGGCTGAAACTCCCACCCTGCAGAACTGTCACTCGTTGGTCTACCACAATTTCTTGGCTCCTACTAAAATACATCTTACCTACAATTGCATCAACACTACTTCTCTTGGCCCTCATTTTTGTGTGGACAAGATGCAGAAAAAGGAATGCAGTGCTTCCAACTCAGGCAGAATCATTACCTCTAGCAACATGGAGGAGAATTTCTTACCAAGAAATTTTCCAAGCTGCAAATGGATTTAGTGGAGGCAATCTACTTGGTAGAGGAAGTTTTGGATCAGTATATAGAGGAACTCTTTCAGATGGGAAGGATGTTGCCATCAAGGTTTTCAATATGCAGGAAGAAGCAGCATTCAAGAGCTTTGATGCAGAATGTGAAGTAATGCGCCATATTCGTCATCGAAATCTAATCAAAATCATTAGCAGCTGCTCTAACTCTTACATTGATTTCAAAGCATTGGTACTGGAGTATGTACCCAATGGAAGTCTTGAGAAGTGGTTGTATTCTCACAACTATTGCTTGGATATCCTGCAGAGATTAAATATAATGATAGATGTCGCATTAGCTATGGAATATCTTCATCACAGTTGTTCAACACCTATTGTTCACTGTGATTTGAAGCCGAGCAATATCCTGCTAGATGAAGATTTTGGTGGGCACGTTGGTGATTTTGGTATTGCAAAACTCCTAGGCGAAGAAGAGTCCATGAGAAAAACACAGACCCTTGCAACCATAGGGTACATGGCACCAGAGTATGGTTCCAATGGAATAGTTACCACTCGTGGCGATGTCTATAGTTATGGTATCGTGTTAATGGAGACATTTACAAGGAGAAGGCCTACAGATGAAATTTTTTCTGAAGAAATGAGCATGAAGAACTGGGTGAGGGATTCACTATGTGGTTCAGTTACTGAAGTGGTGGACGCCAACTTGTTAAGAGGAGAGGATGAACAGTTCATGGCAAAGAAGCAATGTATATCATCAGTCTTGGGATTGGCTGTGGATTGTGTAGCAGATTCACATGAGGAAAGGATCAATATGAAAGATGTTGTAACCACACTCAAGAAAATTAATCTCACATATCTAGCTAGCAGCTATTGA 2076 0.3955 MFTGSIPHALGSLRFLERLHLGANNLKGESSIQELSFLTSLTNCKRLRILYLSFNPLIGILPISIGNLSTSLQLFGASTCKLKGNIPTEIGNLSNLYQLSLNNNDLTGTIPPSIGQLQKLQGLYLPANKLQGSIPNDICQLRNLVELYLANNQLSGSIPACLGELAFLRHLYLGSNKLNSTIPLTLWSLNDILSLDMSSNFLVGYLPSDMGNLKVLVKIDLSRNQLSGEIPSNIGGLLDLTSLSLAHNRLEGPILHSFSNLKSLEFMDLSDNALSGEIPKSLEGLVYLKYLNMSFNRLYGEIPTEGPFANFSAESFMMNKALCGSPRLKLPPCRTVTRWSTTISWLLLKYILPTIASTLLLLALIFVWTRCRKRNAVLPTQAESLPLATWRRISYQEIFQAANGFSGGNLLGRGSFGSVYRGTLSDGKDVAIKVFNMQEEAAFKSFDAECEVMRHIRHRNLIKIISSCSNSYIDFKALVLEYVPNGSLEKWLYSHNYCLDILQRLNIMIDVALAMEYLHHSCSTPIVHCDLKPSNILLDEDFGGHVGDFGIAKLLGEEESMRKTQTLATIGYMAPEYGSNGIVTTRGDVYSYGIVLMETFTRRRPTDEIFSEEMSMKNWVRDSLCGSVTEVVDANLLRGEDEQFMAKKQCISSVLGLAVDCVADSHEERINMKDVVTTLKKINLTYLASSY* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1150 691 Gene3D Ribonuclease Inhibitor 1 339 IPR032675 -
Vvi9g1150 691 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 483 690 - -
Vvi9g1150 691 SMART serkin_6 405 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1150 691 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Vvi9g1150 691 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Vvi9g1150 691 ProSiteProfiles Protein kinase domain profile. 405 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1150 691 PANTHER OS04G0122200 PROTEIN 2 686 - -
Vvi9g1150 691 FunFam Serine-threonine protein kinase plant-type 386 482 - -
Vvi9g1150 691 CDD STKc_IRAK 411 682 - -
Vvi9g1150 691 SUPERFAMILY L domain-like 78 327 - -
Vvi9g1150 691 SMART LRR_typ_2 93 117 IPR003591 -
Vvi9g1150 691 SMART LRR_typ_2 261 285 IPR003591 -
Vvi9g1150 691 SMART LRR_typ_2 141 164 IPR003591 -
Vvi9g1150 691 SMART LRR_typ_2 13 39 IPR003591 -
Vvi9g1150 691 SMART LRR_typ_2 165 189 IPR003591 -
Vvi9g1150 691 SMART LRR_typ_2 213 237 IPR003591 -
Vvi9g1150 691 FunFam Uncharacterized protein 1 339 - -
Vvi9g1150 691 ProSitePatterns Protein kinases ATP-binding region signature. 411 444 IPR017441 GO:0005524
Vvi9g1150 691 SUPERFAMILY RNI-like 2 114 - -
Vvi9g1150 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Vvi9g1150 691 Gene3D Phosphorylase Kinase; domain 1 387 482 - -
Vvi9g1150 691 Pfam Protein kinase domain 409 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1150 691 Gene3D Transferase(Phosphotransferase) domain 1 483 688 - -
Vvi9g1150 691 Pfam Leucine Rich Repeat 46 68 IPR001611 GO:0005515
Vvi9g1150 691 SUPERFAMILY Protein kinase-like (PK-like) 383 679 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1150 Vvi-Chr9 18503190 18505665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1150 2 690 Receptor kinase-like Gene Family AT3G47570 39.266 7.22e-157 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi9g1150 Pkinase 9.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1150 - K13420 vvi:100263953 1228.39