Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1146 ATGAAGCTCACTGTCAAGACCTTGAAGGGAAGCCATTTTGAGATTAGGGTTCAGCCCTCCGATACGGTTATGGCGGTAAAGAAAAACATTGAAGATGTACAAGGAAAAGACAACTATCCGTGTGGGCAACAATTATTGATTCATAATGGAAAGGTCTTGAAAGATGAAACTACACTGGTGGAGAACAAAGTTACAGAAGATGGTTTTCTAGTGGTCATGCTTAGCAAGAGTAAATCCATAGGAGCAACAGGGACCTCATCTGCCCAGTCTGCATCCACTCCTGCACCAGCTGCTATTCCCACTCCTGCCCCAGCTCCTATTCCCACTCCTGCTCCAGCTCCTATTGCCACTCCTGCTCCAGCTCCTATTGCCACTCCTGCTCCAGCTCCTAATCCTACTGCTGCAGCTGAAGCTCCTGTAAATGCACAGGCCCCAAGGAGCATTTCTACATCTGAGGTGGCAACAGATAGTGTGCTTGCTGATACCTATGGTCAAGCTGCTTCAAATATAGTTTCTGCTAATCATCTTGAGCAAACTATTCAACAAATAATGGATATAGGCGGTGGAACCTGGGACAAGGAAACTGTTACCCGTGCACTTCGTGCAGCTTACAACAATCCAGAGCGAGCTGTGGATTATTTATATTCAGGGATTCCAGAAGCAGCAGAAGTTGCTGTTCCAGTGGCTCATTTCCCTGCAGATCAAGAAACTGGTGGTATTAATTCATCAACTGCAGCGGTTGCAGGGTCAGGTGCAGCACCTGCTGCACCTGCCTCTGGAGTTCCTAATTCTTCTCCCCTTAATATGTTTCCTCAGGAAACGCTTTCTGGTGCTGCTGGTGGTGGACTAGGATCTCTTGAATTTCTCAGAAACAACCATCAGTTTCAAGCACTGCGTGCGATGGTACAAGCAAACCCGCAAATTTTACAGCCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGGGGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGGCTTGAGGCAATGGGATTTGACAGAGCTCTTGTCATTGAGGCATTCTTAGCTTGTGATCGAAATGAAGAATTGGCAGTCAACTATCTGTTGGAGAATGCTGGTGATTATGAGGACTGA 1236 0.4652 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAPAPIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1146 411 SMART CBM 284 327 IPR006636 -
Vvi9g1146 411 Gene3D - 170 219 - -
Vvi9g1146 411 Gene3D - 1 80 - -
Vvi9g1146 411 FunFam UV excision repair protein RAD23 homolog 358 406 - -
Vvi9g1146 411 SUPERFAMILY UBA-like 173 224 IPR009060 GO:0005515
Vvi9g1146 411 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 400 - -
Vvi9g1146 411 CDD Ubl_Rad23 1 74 - -
Vvi9g1146 411 SMART ubq_7 1 75 IPR000626 GO:0005515
Vvi9g1146 411 FunFam UV excision repair protein RAD23 homolog 169 219 - -
Vvi9g1146 411 Pfam UBA/TS-N domain 367 402 IPR015940 -
Vvi9g1146 411 Pfam UBA/TS-N domain 177 214 IPR015940 -
Vvi9g1146 411 FunFam UV excision repair protein RAD23 1 80 - -
Vvi9g1146 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 174 217 IPR015940 -
Vvi9g1146 411 MobiDBLite consensus disorder prediction 97 133 - -
Vvi9g1146 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 405 IPR015940 -
Vvi9g1146 411 Gene3D - 276 341 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vvi9g1146 411 FunFam UV excision repair protein RAD23 B 276 342 - -
Vvi9g1146 411 Pfam XPC-binding domain 286 341 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vvi9g1146 411 SUPERFAMILY UBA-like 346 408 IPR009060 GO:0005515
Vvi9g1146 411 MobiDBLite consensus disorder prediction 82 96 - -
Vvi9g1146 411 SMART uba_6 367 404 IPR015940 -
Vvi9g1146 411 SMART uba_6 176 216 IPR015940 -
Vvi9g1146 411 NCBIfam UV excision repair protein Rad23 1 409 IPR004806 GO:0006289
Vvi9g1146 411 PRINTS DNA repair protein Rad23 signature 361 377 IPR004806 GO:0006289
Vvi9g1146 411 PRINTS DNA repair protein Rad23 signature 378 392 IPR004806 GO:0006289
Vvi9g1146 411 PRINTS DNA repair protein Rad23 signature 312 334 IPR004806 GO:0006289
Vvi9g1146 411 PRINTS DNA repair protein Rad23 signature 393 408 IPR004806 GO:0006289
Vvi9g1146 411 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Vvi9g1146 411 Gene3D - 358 406 - -
Vvi9g1146 411 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vvi9g1146 411 SUPERFAMILY XPC-binding domain 282 349 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vvi9g1146 411 MobiDBLite consensus disorder prediction 82 149 - -
Vvi9g1146 411 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1146 Vvi-Chr9 18462399 18481701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1146 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 4.90e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1146 K10839 - vvi:100267246 652.129