Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1145 ATGAATCTGGTTGACCACCCTAACGTTCTTAAATCACACTGCTCATTTGTTAGTGAACACAATTTGTGGGTTGTCATGCCATATATGGCTGGGGGTTCTTGTCTTAACATTTTGAAGGCTGCCTATCCTGATGGTCTAGAGGAGGTAGTTATCGCAACAATCTTACGTGAGGTATTGAAGGGTTTAGAGTATCTTCATCACCATGGGCACATACATCGAGATGTCAAGGCTGGAAATATTCTCATTGATGCACGTGGTGCAATCAAACTGGGAGATTTTGGTGTTTCTGCTTGCCTCTTTGATTCGGGTGATAGGCAGCGTTCAAGGAACACATTTGTGGGGACACCTTGCTGGATGGCCCCTGAGGTTATGGAGCAGTTACATGGTTATGACTTCAAGGCTGATATCTGGTCTTTTGGTATAACTGCATTGGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAATATCCTCCTATGAAGGTCCTGCTTATGACTTTGCAAAATGCTCCCCCTGGCCTTGATTATGAAAGAGATAGAAAATTTTCTAAGTCTTTTAAGCAGATGATTGCAAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTTCTGCAAAAAAGTTGCTAAAGCATCCTTTCTTTAAGCAAGCTAGGTCAAGTGATTATATAGGACGAACACTTTTGGAGGGGCTGCCTGATCTTGGTGAGCGTATTAAAGAATTGAAGAGGAAAGAAGAAGATATGCTTGCACAAAAAAAAATGCCAGATGGGGAAAAGGAGGAGCTATCACAGAATGAATATAAACGGGGGATTAGTGGTTGGAATTTCAATCTTGAAGATGTAAAGGCTCAGGCTTCCCTGATCCCAGATGTCGAGGATTCTGGGTCTGATTTAGGAGGGAGCTCGAATTCTTTGTCTGGGCTTGATGTGCATGAGAAACAATCCTCTATGGGTCATCTTTCACAAGTTGCAGAGGAAGGTAGTGATTTGATGCAGAATCTGCCAGTTCCTCTTCCATCAGTTGACTCAGCCATTAATAATATCAGAGTTCAATCTTATAAATCTGATGACGAATCGAGCATTGCCAGTTCAAGCCATGAACACCATATTTCACAGGGTTCTTCTCCTCGTCATGATGATCAAATTGAAAATAATTTGGCTGAAAAACCTGATCCAGAAATTAGTGAAAAATTATTGGATATGGCTATTCAATCTCAGAAGGTTGGGAGTTCGTCTGACAGCACCAGTTCACTAGAAGTCAATTGTCCTGTGAAAGGAGAAAGTGGTAACTTGCAAAATCAGCTTAGGAAGATGTCAAGTTGTAATGGAACAACAGTTGTGACAGTAGTAGACGAGGCACCTTCTGAAATAATTTCTAGGACATCCAAATCATCAGCAAACAGTGATGAACCTGATGAGAGAGCAAAGATGCCAGTTGTTCAGCAAAGAGGACGTTTCAAGGTCACATCTGAGAATGTTGACTTAGAAAAGGTGGTTTCATCTCCAATGCTGCAAAAGAGTCACAGCTTTCAGGTTCTTAATCAGCCTCCTACAATTTCTCTTTCATCACCTTTGCCATCACCATCACCATCCGAAGCTACACCTTCGAATCATCAGGGTCATTTCCTTTTTTCGTTGTTGAATTCTGTTTTGCAGTCAAATATTCTTCAAAGGGATACTATCCTAGGAATCATGAGACATCTCTCTTCTAGTGAGTTTATAGCTAACTGTGCAGCTGATGGGGGGTGTATGCCAATGTATACAAGTGTGGCCGAGAAATCAATGCTTGAGGCTGCTCATGAGAGGGAAAAGGACTTGCTCCATGAAGTGGCTGAATTACAGTGGAGACTCATATGTGCTCAGGAAGAAATCCAGAAATTTAAGACAGAAAACGCTCAGGTATGA 1899 0.4186 MNLVDHPNVLKSHCSFVSEHNLWVVMPYMAGGSCLNILKAAYPDGLEEVVIATILREVLKGLEYLHHHGHIHRDVKAGNILIDARGAIKLGDFGVSACLFDSGDRQRSRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSAKKLLKHPFFKQARSSDYIGRTLLEGLPDLGERIKELKRKEEDMLAQKKMPDGEKEELSQNEYKRGISGWNFNLEDVKAQASLIPDVEDSGSDLGGSSNSLSGLDVHEKQSSMGHLSQVAEEGSDLMQNLPVPLPSVDSAINNIRVQSYKSDDESSIASSSHEHHISQGSSPRHDDQIENNLAEKPDPEISEKLLDMAIQSQKVGSSSDSTSSLEVNCPVKGESGNLQNQLRKMSSCNGTTVVTVVDEAPSEIISRTSKSSANSDEPDERAKMPVVQQRGRFKVTSENVDLEKVVSSPMLQKSHSFQVLNQPPTISLSSPLPSPSPSEATPSNHQGHFLFSLLNSVLQSNILQRDTILGIMRHLSSSEFIANCAADGGCMPMYTSVAEKSMLEAAHEREKDLLHEVAELQWRLICAQEEIQKFKTENAQV* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1145 632 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 627 IPR047173 GO:0043539
Vvi9g1145 632 FunFam serine/threonine-protein kinase BLUS1 isoform X1 32 265 - -
Vvi9g1145 632 MobiDBLite consensus disorder prediction 353 368 - -
Vvi9g1145 632 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1145 632 SMART serkin_6 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1145 632 MobiDBLite consensus disorder prediction 455 478 - -
Vvi9g1145 632 MobiDBLite consensus disorder prediction 288 321 - -
Vvi9g1145 632 Gene3D Transferase(Phosphotransferase) domain 1 32 266 - -
Vvi9g1145 632 MobiDBLite consensus disorder prediction 507 535 - -
Vvi9g1145 632 MobiDBLite consensus disorder prediction 464 478 - -
Vvi9g1145 632 MobiDBLite consensus disorder prediction 353 381 - -
Vvi9g1145 632 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Vvi9g1145 632 Coils Coil 229 249 - -
Vvi9g1145 632 Pfam Protein kinase domain 2 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1145 632 Coils Coil 608 628 - -
Vvi9g1145 632 MobiDBLite consensus disorder prediction 294 321 - -
Vvi9g1145 632 SUPERFAMILY Protein kinase-like (PK-like) 2 213 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1145 Vvi-Chr9 18376029 18405213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1145 1 614 MAP Kinase Kinase Kinase Kinase AT1G79640 61.958 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vvi9g1145 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1145 K08835 - vvi:100251927 1211.82