Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1133 ATGTATGTTCCACTTAGGATAGTCCTAAACAAGGGCACGAGTAGTATGTTTAGATGCCCGGCTTATAAATGTAAAGCTATTCTAGAACTTAGCCCTGGAATTGTCCCCGGACCTGTATTCCAAAGATGGAATGCAGCAAAGTATGAAGCACTCCATATTGAATCCAAAAAAAACCAGAGTCCTTTTGAGGACTGCAACAAGGGAGGAGTCAGCAGAGAGAGTGAGTATCCATGGAATTCCCATAAGGATCAGCTCCGGGTACTGGGAGAATCTGGTAAAAAAGTGGGGGAACCATCACAGGGAAGGTTTAGGTTTTATGGGATGTGTGAAATCTGCTGTGAAAGGAAGGAAAGTACTGGGATGTTCAGAAATGAGGGCTGCAGGCACTCGGTCTGCACTGACTGCATAAGTAAACACGTAGAAGTTAAGATTGAAAGCAACTCCGGCATGATTCTATGCCCGGGTATGGACTGCAGAGGTGTGCTAGATCCGGAGCGCTGCAGGGGATTCTTGCCCAAAACGGTCGTGGAGAGGTGGGAAAAGGCAATAATCGAGACACTGATTCTTGATTCGGAGAAATTCTACTGCCCTTTCAAGGACTGCTCAGCCATGTTGCTGAATGACAATGCAGAAGCAGTGATGATGATGAGAGAGTCTGAGTGTCCTCATTGCCGGAGACTCTTCTGTGTACAGTGTCGTGTGCCATGGCATTCGGGGATGGAATGCAGGGAAGTCCAGAGGCTAAATGCAGATGAAAGAGGAAGGGAAGATATGCTGCTGAAGAAGCTTGCCGAGGAAAAGAAATGGAAGAGATGCCCCCAATGCAAATTCTACGTAGAAAAAATTGAAGGCTGTGTGCACTTGACCTGCAGATGTGGATTCGAATTCTGCTATCGATGTGGAGGAAAATGGTCAGTGAACCATGGCACATGTCAACTCTGGCGATAG 948 0.4684 MYVPLRIVLNKGTSSMFRCPAYKCKAILELSPGIVPGPVFQRWNAAKYEALHIESKKNQSPFEDCNKGGVSRESEYPWNSHKDQLRVLGESGKKVGEPSQGRFRFYGMCEICCERKESTGMFRNEGCRHSVCTDCISKHVEVKIESNSGMILCPGMDCRGVLDPERCRGFLPKTVVERWEKAIIETLILDSEKFYCPFKDCSAMLLNDNAEAVMMMRESECPHCRRLFCVQCRVPWHSGMECREVQRLNADERGREDMLLKKLAEEKKWKRCPQCKFYVEKIEGCVHLTCRCGFEFCYRCGGKWSVNHGTCQLWR* 316
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1133 315 CDD BRcat_RBR_unk 190 244 - -
Vvi9g1133 315 Gene3D - 194 244 - -
Vvi9g1133 315 Gene3D - 245 315 - -
Vvi9g1133 315 SMART ibrneu5 177 242 IPR002867 GO:0008270
Vvi9g1133 315 SMART ibrneu5 252 311 IPR002867 GO:0008270
Vvi9g1133 315 ProSiteProfiles Zinc finger RING-type profile. 109 154 IPR001841 -
Vvi9g1133 315 SUPERFAMILY RING/U-box 108 186 - -
Vvi9g1133 315 ProSiteProfiles TRIAD supradomain profile. 105 315 IPR044066 -
Vvi9g1133 315 FunFam RBR-type E3 ubiquitin transferase 106 190 - -
Vvi9g1133 315 ProSitePatterns Zinc finger RING-type signature. 127 136 IPR017907 -
Vvi9g1133 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 187 IPR013083 -
Vvi9g1133 315 SUPERFAMILY RING/U-box 253 311 - -
Vvi9g1133 315 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 89 304 IPR031127 GO:0004842|GO:0016567
Vvi9g1133 315 Pfam IBR domain, a half RING-finger domain 178 242 IPR002867 GO:0008270
Vvi9g1133 315 Pfam IBR domain, a half RING-finger domain 257 311 IPR002867 GO:0008270
Vvi9g1133 315 SUPERFAMILY RING/U-box 182 247 - -
Vvi9g1133 315 CDD Rcat_RBR_unk 268 304 - -
Vvi9g1133 315 FunFam RBR-type E3 ubiquitin transferase 244 315 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi9g1133 Vvi-Chr9 18112568 18113665 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1133 106 302 C3H Transcription Factor Family AT2G19610 29.902 5.12e-22 94.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1133 K11975 - vvi:100251833 681.789