Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g1133 | ATGTATGTTCCACTTAGGATAGTCCTAAACAAGGGCACGAGTAGTATGTTTAGATGCCCGGCTTATAAATGTAAAGCTATTCTAGAACTTAGCCCTGGAATTGTCCCCGGACCTGTATTCCAAAGATGGAATGCAGCAAAGTATGAAGCACTCCATATTGAATCCAAAAAAAACCAGAGTCCTTTTGAGGACTGCAACAAGGGAGGAGTCAGCAGAGAGAGTGAGTATCCATGGAATTCCCATAAGGATCAGCTCCGGGTACTGGGAGAATCTGGTAAAAAAGTGGGGGAACCATCACAGGGAAGGTTTAGGTTTTATGGGATGTGTGAAATCTGCTGTGAAAGGAAGGAAAGTACTGGGATGTTCAGAAATGAGGGCTGCAGGCACTCGGTCTGCACTGACTGCATAAGTAAACACGTAGAAGTTAAGATTGAAAGCAACTCCGGCATGATTCTATGCCCGGGTATGGACTGCAGAGGTGTGCTAGATCCGGAGCGCTGCAGGGGATTCTTGCCCAAAACGGTCGTGGAGAGGTGGGAAAAGGCAATAATCGAGACACTGATTCTTGATTCGGAGAAATTCTACTGCCCTTTCAAGGACTGCTCAGCCATGTTGCTGAATGACAATGCAGAAGCAGTGATGATGATGAGAGAGTCTGAGTGTCCTCATTGCCGGAGACTCTTCTGTGTACAGTGTCGTGTGCCATGGCATTCGGGGATGGAATGCAGGGAAGTCCAGAGGCTAAATGCAGATGAAAGAGGAAGGGAAGATATGCTGCTGAAGAAGCTTGCCGAGGAAAAGAAATGGAAGAGATGCCCCCAATGCAAATTCTACGTAGAAAAAATTGAAGGCTGTGTGCACTTGACCTGCAGATGTGGATTCGAATTCTGCTATCGATGTGGAGGAAAATGGTCAGTGAACCATGGCACATGTCAACTCTGGCGATAG | 948 | 0.4684 | MYVPLRIVLNKGTSSMFRCPAYKCKAILELSPGIVPGPVFQRWNAAKYEALHIESKKNQSPFEDCNKGGVSRESEYPWNSHKDQLRVLGESGKKVGEPSQGRFRFYGMCEICCERKESTGMFRNEGCRHSVCTDCISKHVEVKIESNSGMILCPGMDCRGVLDPERCRGFLPKTVVERWEKAIIETLILDSEKFYCPFKDCSAMLLNDNAEAVMMMRESECPHCRRLFCVQCRVPWHSGMECREVQRLNADERGREDMLLKKLAEEKKWKRCPQCKFYVEKIEGCVHLTCRCGFEFCYRCGGKWSVNHGTCQLWR* | 316 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g1133 | 315 | CDD | BRcat_RBR_unk | 190 | 244 | - | - | |
Vvi9g1133 | 315 | Gene3D | - | 194 | 244 | - | - | |
Vvi9g1133 | 315 | Gene3D | - | 245 | 315 | - | - | |
Vvi9g1133 | 315 | SMART | ibrneu5 | 177 | 242 | IPR002867 | GO:0008270 | |
Vvi9g1133 | 315 | SMART | ibrneu5 | 252 | 311 | IPR002867 | GO:0008270 | |
Vvi9g1133 | 315 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 154 | IPR001841 | - | |
Vvi9g1133 | 315 | SUPERFAMILY | RING/U-box | 108 | 186 | - | - | |
Vvi9g1133 | 315 | ProSiteProfiles | TRIAD supradomain profile. | 105 | 315 | IPR044066 | - | |
Vvi9g1133 | 315 | FunFam | RBR-type E3 ubiquitin transferase | 106 | 190 | - | - | |
Vvi9g1133 | 315 | ProSitePatterns | Zinc finger RING-type signature. | 127 | 136 | IPR017907 | - | |
Vvi9g1133 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 187 | IPR013083 | - | |
Vvi9g1133 | 315 | SUPERFAMILY | RING/U-box | 253 | 311 | - | - | |
Vvi9g1133 | 315 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 89 | 304 | IPR031127 | GO:0004842|GO:0016567 | |
Vvi9g1133 | 315 | Pfam | IBR domain, a half RING-finger domain | 178 | 242 | IPR002867 | GO:0008270 | |
Vvi9g1133 | 315 | Pfam | IBR domain, a half RING-finger domain | 257 | 311 | IPR002867 | GO:0008270 | |
Vvi9g1133 | 315 | SUPERFAMILY | RING/U-box | 182 | 247 | - | - | |
Vvi9g1133 | 315 | CDD | Rcat_RBR_unk | 268 | 304 | - | - | |
Vvi9g1133 | 315 | FunFam | RBR-type E3 ubiquitin transferase | 244 | 315 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi9g1133 | Vvi-Chr9 | 18112568 | 18113665 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi9g1133 | 106 | 302 | C3H Transcription Factor Family | AT2G19610 | 29.902 | 5.12e-22 | 94.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g1133 | K11975 | - | vvi:100251833 | 681.789 |