Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1132 ATGGCTCAAGAACCCACCTCTGCTCACCTCTTTGTCGATGATTTCTACTTCTCAGCCCTCCTGGATCAGCTTGAAGATACTGAAGATTTCGTAGTTTCAGACGCCAAGTATGCGGAAGAGCTGCAGTTTCAAGAGGCCTTAATGGCATCCGTAGAGGCCGCATCTAATACTGCTGTCCAAGAAACTGCGCCATCAATAAAAGAAATAGGTTCAAGCTCAGGCTCAAGCAGTGCTGCAGACGCTGCTGTTGATATGGCCGTGGTGGAAGAAGGCCAAACATCGGAGAATTTCTGCGAGATTTGCGCGGAAAGGAGGGGGTTGGATGAGATGTTTAGGAGTGGGAAATGTTGCCATACATTCTGCAGCTACTGCATAAGCAAACATGTGGCAGTGAAGATCCAAGAGAGCGTGAGAATGGTCACATGTCCGGCCTTGAGCTGCGAAGGGGTGCTGGAAGTTGATGATTGTAGGGGAATTGTGGCGAGAGAAGTGATGGAGAAGTGGGAAGAGGTCAGTTGCGAGTCAATAATAGCAGCATCGCAGAGGTTTTACTGCCCTTTCAGGGACTGTTCAGCCATGTTGGTGGATGATAATGGAGGGGAAGTTATAAGGGAGTCTGAGTGTCCGGTATGCCGGAGGCTGTTCTGCGCGGCCTGCTACGTGCCGTGGCACTCAGGGGTTGGGTGTGAGGAGTATCAGATGATGAATGAGGATGAGAAAGGGAGGGAGGATCTGATGCTGAGGGAGCTTGCTCAGGAGAAGAAATGGAGGAGGTGCCCACAGTGCAAGTTCTATGTGGAAAAGATCGAAGGTTGTTTACACATTACTTGCAGGTGCACGTACCAATTTTGCTATGCATGCGGAGCACAGTGGACTCAGCACCATGGGGGCTGCCAAACACAATGA 906 0.5044 MAQEPTSAHLFVDDFYFSALLDQLEDTEDFVVSDAKYAEELQFQEALMASVEAASNTAVQETAPSIKEIGSSSGSSSAADAAVDMAVVEEGQTSENFCEICAERRGLDEMFRSGKCCHTFCSYCISKHVAVKIQESVRMVTCPALSCEGVLEVDDCRGIVAREVMEKWEEVSCESIIAASQRFYCPFRDCSAMLVDDNGGEVIRESECPVCRRLFCAACYVPWHSGVGCEEYQMMNEDEKGREDLMLRELAQEKKWRRCPQCKFYVEKIEGCLHITCRCTYQFCYACGAQWTQHHGGCQTQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1132 301 ProSitePatterns Zinc finger RING-type signature. 116 125 IPR017907 -
Vvi9g1132 301 Pfam IBR domain, a half RING-finger domain 166 229 IPR002867 GO:0008270
Vvi9g1132 301 Pfam IBR domain, a half RING-finger domain 245 297 IPR002867 GO:0008270
Vvi9g1132 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 180 IPR013083 -
Vvi9g1132 301 Gene3D - 227 301 - -
Vvi9g1132 301 FunFam RBR-type E3 ubiquitin transferase 231 301 - -
Vvi9g1132 301 ProSiteProfiles Zinc finger RING-type profile. 98 143 IPR001841 -
Vvi9g1132 301 CDD Rcat_RBR_unk 255 291 - -
Vvi9g1132 301 SMART ibrneu5 166 229 IPR002867 GO:0008270
Vvi9g1132 301 SMART ibrneu5 239 298 IPR002867 GO:0008270
Vvi9g1132 301 SUPERFAMILY RING/U-box 171 233 - -
Vvi9g1132 301 ProSiteProfiles TRIAD supradomain profile. 94 301 IPR044066 -
Vvi9g1132 301 FunFam RBR-type E3 ubiquitin transferase 93 179 - -
Vvi9g1132 301 SUPERFAMILY RING/U-box 94 176 - -
Vvi9g1132 301 CDD BRcat_RBR_unk 179 232 - -
Vvi9g1132 301 SUPERFAMILY RING/U-box 240 299 - -
Vvi9g1132 301 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 68 292 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1132 Vvi-Chr9 18105560 18107310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1132 10 289 C3H Transcription Factor Family AT2G19610 26.644 2.64e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1132 K11975 - vvi:100256964 614.764