Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1131 ATGCACTGTGATGAACATAGAAAGGAGGGTAAGGAGGGTCTCAATAAAGGAAAATTTTATTGCTCTTCCATCTCCACCATGGTCTTCAAAAGAACCATGTTTCTTCTTCTACTTCAGAATTTCCTTGTAATAAGCTCTAGTCTGGTAAGCTTGGGTTATCAGCACCACTCTGGTCACTCTTCACTCACAGACAAGGCTGCTCTTCTGGAATTCAAGAAGGCCATAGTATCCGACCCGACTTTCGCACTTGCTAACTGGCAAGAGAGCAATGATGTATGCAACTTCACAGGGGTCGTGTGCAATACAAGGCATCATCGAGTAGCAAACTTAACCCTCAATCGCACTGGCCTTGTGGGATACATTTCGCCCTTCATTTCAAATCTCACTGAGCTTCTTTGCCTACAGCTCGCTGAGAATAATTTCTCCAGCACTATTCCACTTGAGATATCCTCTCTCCGGCGCCTTCGCTTTCTGAAGCTCCACAATAACAACATGCAAGGTTCAATACCAGAATCCCTTTCTCTTCTTCATGACCTTGAATTGTTACATCTTTTTGGAAACAACTTGACTGGTCCAATTCCAGCTTCCTTATTCTCCAACTGCTCTATGTTGCAAAATGTAGACCTTTCTGGCAACCGTCTTACAGGAAAAATTCCACCAGAGATTGGAAATTGTCCATATCTATGGACCCTCAATTTATACAATAATCAATTTACTGGACAAATCCCTTTTTCCTTAACCAATGCTTCATACATGTTTAATTTGGATTTTGAATATAACCATATTTCTGGTGAATTGCCTTCAGATATCGTAGTGAAATTGTATCGGCTTGTTTATCTTCATATATCTTACAATGATATGGTTAGTCATGATGCCAATACTAATCTTGATCCCTTCTTTGCCTCCCTTGTAAACTGCTCTTCTCTTGAGGAGCTTGAAATGGAAGGTATGAGCCTTGGAGGAAAATTGCCAAATTTCATGGGTCAACTTGGTGTTAATCTAACAAATCTTGTTCTGAATGGCAACCAAATATCTGGATCAATACCTCCGAGTTTAGGGAATTTCTCCATACTTACGAGCCTGAATTTATCATCGAATCTATTAAGTGGAACAATTCCGCTAGAGTTCAGTGGATTGTCAAACTTGCAACAGCTTATCTTGTCACACAACAGTCTCAATGGTTCCATTCCAAAAGAATTAGGGAATATAGGAGGTCTGGGTCATTTGGATTTATCTCACAACAACCTATCAGGCAACATACCAGAGAGTATAGGGAATTTGTTTCAGTTGAATTATCTGTTCCTCAACAACAATAACCTCTCAGGAGCAGTACCTCGAAGTTTAGGACATTGCATTGATCTGAACAAGCTTGACTTCTCCTACAACAGATTGACAGGGGGCATCCCTCCAGAAATATCAAGTTTGCTCGAGATCCGAATATTCCTGAATCTTTCACATAATCTTCTCGAAGGGCCTTTGCCAATTGAGCTCAGCAAGCTGCAAAATGTCCAGGAGATAGATCTCTCGTCGAACAACTTCAATGGAAGTATCTTCGACCCAATATTAAATTGTATTGCCTTAAGATTGTTAAATTTCTCGCACAATGCTCTTGAAGGGCCGCTTCCTGATTCCTTGGGTGATTTCAAGAACCTGGAGGTCTTTGATGTTTCAAAGAACCAATTGTCTGGAAAGATCCCAACAACCCTCAATAGAACCCGCACGCTCACCTTTCTGAATCTTTCATATAACAACTTTGATGGGCAGATTCCCTCCGGTGGCATCTTTGCTTCAGTTACAAATCTTTCCTTCTTAGGCAATCCGAATCTTTGTGGCTCAGTTGTTGGCATACCCACTTGCCGTAAGAAGCGAAACTGGTTACATTCACACAGGTTTGTGATTATTTTCTCAGTTGTGATATCTATATCTGCATTCTTATCAACTATAGGTTGTGTTATTGGCTGCCGATATATCAAGAGAATTATGTCCTCTGGGAGGTCTGAAACAGTGAGAAAATCAACACCAGACTTGATGCACAATTTCCCAAGAATGACATACAGAGAACTGTCAGAGGCCACTGGAGGATTTGATGATCAGAGACTAATTGGCTCAGGGAGTTACGGACGTGTCTTCAAGGGAGTTCTTTCAGATGGAACTGCCATAGCAGTCAAGGTGTTACAGTTGCAAACTGGCAATTCCACCAAGAGTTTTAACAGAGAATGCCAAGTCTTAAAGAGGATCCGCCATAGGAACCTGATAAGAATCATCACAGCTTGCAGCCTACCTGATTTCAAAGCCCTTGTCCTTCCTTTTATGGCAAATGGGAGCTTGGATAGCCGTCTCTATCCACACTCAGAGACAGGTTTGGGTTCGGGTTCTTCAGATCTGAGCCTCATCCAGAGGGTGAACATCTGCAGTGATATAGCTGAAGGGATGGCTTATCTGCATCACCACTCCCCAGTCAGAGTCATACACTGTGATCTAAAGCCGAGCAATGTACTTCTTAACGATGAAATGACAGCTCTGGTTTCGGATTTTGGGATCTCAAGATTGGTTTCAACAGTGGGAAATGCTGGAGGTGTTGAGCACATGGGAAATTCTACTGCCAATATGCTTTGTGGATCCATTGGATACATTGCACCAGAATACGGGTACGGAGCCAACACAACTACAAAAGGAGATGTTTACAGCTTTGGCATACTAGTTCTTGAGATGGTGACCAGAAAAAGGCCTACAGATGACATGTTTGTTGGGGGACTGAACCTGCACAGATGGGTGAAGAGTCACTACCATGGAAGAATGGAAAGGGTGGTAGATTCATCACTGTTGAGAGCTTCCACAGCTCAGCCTCCTGAAGTGAAGAAAATGTGGCAAGTCGCCATTGGAGAACTGATCGAATTAGGCATTCTTTGCACGCAGGAGTCTTCCTCTACTAGGCCTACAATGCTGGATGCTGCCGATGACTTAGATCGCCTCAAACGCTACCTCACCGGCGACAGTACCACCGCCACATTTGCCTCTTCTCTTGGAATTTCGTCTTCGACCCTCGATGATGATGACCAACTGTCTCTAATTTGA 3075 0.4283 MHCDEHRKEGKEGLNKGKFYCSSISTMVFKRTMFLLLLQNFLVISSSLVSLGYQHHSGHSSLTDKAALLEFKKAIVSDPTFALANWQESNDVCNFTGVVCNTRHHRVANLTLNRTGLVGYISPFISNLTELLCLQLAENNFSSTIPLEISSLRRLRFLKLHNNNMQGSIPESLSLLHDLELLHLFGNNLTGPIPASLFSNCSMLQNVDLSGNRLTGKIPPEIGNCPYLWTLNLYNNQFTGQIPFSLTNASYMFNLDFEYNHISGELPSDIVVKLYRLVYLHISYNDMVSHDANTNLDPFFASLVNCSSLEELEMEGMSLGGKLPNFMGQLGVNLTNLVLNGNQISGSIPPSLGNFSILTSLNLSSNLLSGTIPLEFSGLSNLQQLILSHNSLNGSIPKELGNIGGLGHLDLSHNNLSGNIPESIGNLFQLNYLFLNNNNLSGAVPRSLGHCIDLNKLDFSYNRLTGGIPPEISSLLEIRIFLNLSHNLLEGPLPIELSKLQNVQEIDLSSNNFNGSIFDPILNCIALRLLNFSHNALEGPLPDSLGDFKNLEVFDVSKNQLSGKIPTTLNRTRTLTFLNLSYNNFDGQIPSGGIFASVTNLSFLGNPNLCGSVVGIPTCRKKRNWLHSHRFVIIFSVVISISAFLSTIGCVIGCRYIKRIMSSGRSETVRKSTPDLMHNFPRMTYRELSEATGGFDDQRLIGSGSYGRVFKGVLSDGTAIAVKVLQLQTGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPFMANGSLDSRLYPHSETGLGSGSSDLSLIQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDEMTALVSDFGISRLVSTVGNAGGVEHMGNSTANMLCGSIGYIAPEYGYGANTTTKGDVYSFGILVLEMVTRKRPTDDMFVGGLNLHRWVKSHYHGRMERVVDSSLLRASTAQPPEVKKMWQVAIGELIELGILCTQESSSTRPTMLDAADDLDRLKRYLTGDSTTATFASSLGISSSTLDDDDQLSLI* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1131 1024 Pfam Leucine rich repeat N-terminal domain 63 101 IPR013210 -
Vvi9g1131 1024 Pfam Leucine rich repeat 333 392 IPR001611 GO:0005515
Vvi9g1131 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 675 770 - -
Vvi9g1131 1024 SMART serkin_6 695 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1131 1024 CDD STKc_IRAK 701 991 - -
Vvi9g1131 1024 SUPERFAMILY L domain-like 302 603 - -
Vvi9g1131 1024 Gene3D Phosphorylase Kinase; domain 1 675 770 - -
Vvi9g1131 1024 Gene3D Ribonuclease Inhibitor 255 622 IPR032675 -
Vvi9g1131 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Vvi9g1131 1024 SUPERFAMILY Protein kinase-like (PK-like) 676 988 IPR011009 -
Vvi9g1131 1024 Gene3D Ribonuclease Inhibitor 63 178 IPR032675 -
Vvi9g1131 1024 Gene3D Ribonuclease Inhibitor 179 254 IPR032675 -
Vvi9g1131 1024 ProSitePatterns Protein kinases ATP-binding region signature. 701 723 IPR017441 GO:0005524
Vvi9g1131 1024 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 482 988 - -
Vvi9g1131 1024 Pfam Protein kinase domain 696 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1131 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 771 1001 - -
Vvi9g1131 1024 ProSiteProfiles Protein kinase domain profile. 695 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1131 1024 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 406 623 - -
Vvi9g1131 1024 SUPERFAMILY RNI-like 109 393 - -
Vvi9g1131 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 300 399 - -
Vvi9g1131 1024 Pfam Leucine Rich Repeat 408 427 IPR001611 GO:0005515
Vvi9g1131 1024 Gene3D Transferase(Phosphotransferase) domain 1 771 1004 - -
Vvi9g1131 1024 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 93 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1131 Vvi-Chr9 18080593 18083816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1131 58 1001 Receptor kinase-like Gene Family AT3G47570 35.961 2.98e-179 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi9g1131 Pkinase 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1131 - - vvi:100262071 1924.06