Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1123 ATGGGGATATATCTAAGCAGTCCCAGAAAAGAGAAGTCTTCAGAAGATGGTGAGAATGCTAGGGTTAGGTATGGTTTATCATCAATGCAAGGGTGGCGTACAACCATGGAAGATGCTCATGCAGCTTATCCGGATTTGGACAGTTCCACTTCTTTCTTTGCTGTTTACGATGGGCATGGAGGTGTTGCTAGGTTTTGCGCTAAGTACCTTCACGAACAGGTGCTGAAGAATGAAGCATGTTCAGCAGGAGATTTAGGTGGTTCTGTAAGGAAAGCTTTTCTCAGAATGGATGAAATGATGCGTGGAGAAAGAGGTTGGAGAGAATTAGCTAAGTTTGAAGATAGAGTAGACAGGTTTAGTCGTATCAATTATGATTCAATGTGCTCTCCAATGAGTGATGAATTTAATGATCAAAATGATGATTGGACTGAGGAGGGGCCTAACTATGATTTCCGTGGACCGAATTCGGGAAGCACTGCTTGCGTTGCTATCATTCGGGGTGACCAACTTCTTGTTGCAAATGCTGGTGATTCTCGTTGTGTACTGTCTAGGGCGGGTGAGGCATACGATTTGTCTACGGATCACAAGCCTGAGCTTCAGGAAGAGAAAGAAAGGATCCTAAAAGCTGGTGGTTGTATCCAACATGGACGGGTCAATGGAGTTTTAAACTTGGCAAGAGCAATTGGAGACAATGAATTCAAAATGAACAAATCTCTGCCTGCAGAAAAGCAAATGGTCACTGCCAATCCAGAGATAAACACTGCTTCTCTTTGCAATGATGATGATTTTATGGTTCTAGCTTGTGATGGGATCTGGGACTGCATGACAAGCCAAGAACTGGTGGAATTCGTACATGAACAGCTAAATTCAGGATGTAAGCTCTCAGCAGTGTGTGAAAAAGTGCTGGACAAGTGTTTAGCACCATCTTCTGGTGGCGAGGGATGTGACAACATGACTATGATCTTGGTGCAGTTCAAGAAACCTATTCACTCCAGTGCTTCTGCTGGGAAGCAGGAGCCTCTGCCTTCAGATATTCCATCCGGGTCTAATCAGGCACCAACGGGGACCAATTCATAG 1077 0.4448 MGIYLSSPRKEKSSEDGENARVRYGLSSMQGWRTTMEDAHAAYPDLDSSTSFFAVYDGHGGVARFCAKYLHEQVLKNEACSAGDLGGSVRKAFLRMDEMMRGERGWRELAKFEDRVDRFSRINYDSMCSPMSDEFNDQNDDWTEEGPNYDFRGPNSGSTACVAIIRGDQLLVANAGDSRCVLSRAGEAYDLSTDHKPELQEEKERILKAGGCIQHGRVNGVLNLARAIGDNEFKMNKSLPAEKQMVTANPEINTASLCNDDDFMVLACDGIWDCMTSQELVEFVHEQLNSGCKLSAVCEKVLDKCLAPSSGGEGCDNMTMILVQFKKPIHSSASAGKQEPLPSDIPSGSNQAPTGTNS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1123 358 ProSiteProfiles PPM-type phosphatase domain profile. 23 325 IPR001932 -
Vvi9g1123 358 SMART PP2C_SIG_2 28 325 IPR001932 -
Vvi9g1123 358 CDD PP2Cc 22 325 IPR001932 -
Vvi9g1123 358 FunFam probable protein phosphatase 2C 60 1 326 - -
Vvi9g1123 358 PANTHER PROTEIN PHOSPHATASE 2C 14 324 IPR015655 GO:0004722|GO:0006470
Vvi9g1123 358 MobiDBLite consensus disorder prediction 343 358 - -
Vvi9g1123 358 SUPERFAMILY PP2C-like 3 326 IPR036457 -
Vvi9g1123 358 SMART PP2C_4 13 323 IPR001932 -
Vvi9g1123 358 MobiDBLite consensus disorder prediction 331 358 - -
Vvi9g1123 358 Gene3D - 1 326 IPR036457 -
Vvi9g1123 358 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vvi9g1123 358 Pfam Protein phosphatase 2C 127 310 IPR001932 -
Vvi9g1123 358 Pfam Protein phosphatase 2C 23 102 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1123 Vvi-Chr9 17855541 17879701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1123 1 328 PP2C-type Phosphatase Gene Family AT2G25070 67.470 2.47e-167 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1123 K17499 - vvi:100248342 732.25