Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1116 ATGGAAGCTTCAGCTGTTGGCGCTGATGTGAGCATGATTGGACAGTTTGGTGTGGGGTTCTACTCGGCTTACTTGGTGGTTGAGAAGGTGATTATTACTACCAAGCACAATGAAGATGAACAGCATGTCTGGAAGTCACATGCTGATAGTTCAAATAAACGTCCCCCAGAATACATTTACCTTGAGAACGGGACTTCCCTCCGCGGTGTAATGAATGCATGGAAAAATGCTGCATTGTACTCTTTGGATGAAGCCATAAGAGTGGCCATTGGTTGTTCAATGATAAAGAGATCCACATTCTGTCTGAACTGTAAAGGTCGTATTTTTGGAGCTGGCATTGGAAATTCAAAGGTTTTATGTTTATCTTGTTTGCAATTAAAGGAGTCTCAAGCCGGCCCTTCTCAAGTGACTGGTAGTAGTGATAGTCATCTCAGGTCACCAAAACCAAGTACAATATCAAGGTCAGCTGAGAGTGTGTCAAAGTGCAGCTCGTCAGGAAGTAAGAGTTATGGGAGGGTAACTAAAAAAGATCTGAGCTTGCATAAATTAGTTTTTGGAGAAAATGGCCTGCTTGAAGGAACATAA 585 0.4239 MEASAVGADVSMIGQFGVGFYSAYLVVEKVIITTKHNEDEQHVWKSHADSSNKRPPEYIYLENGTSLRGVMNAWKNAALYSLDEAIRVAIGCSMIKRSTFCLNCKGRIFGAGIGNSKVLCLSCLQLKESQAGPSQVTGSSDSHLRSPKPSTISRSAESVSKCSSSGSKSYGRVTKKDLSLHKLVFGENGLLEGT* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1116 194 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 7 54 IPR036890 -
Vvi9g1116 194 Gene3D - 1 87 IPR036890 -
Vvi9g1116 194 PANTHER AUTOIMMUNE REGULATOR 43 194 - -
Vvi9g1116 194 Pfam Tify domain binding domain 44 72 IPR032308 -
Vvi9g1116 194 MobiDBLite consensus disorder prediction 132 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1116 Vvi-Chr9 17778570 17779154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1116 44 194 PHD Transcription Factor Family AT2G36720 27.602 6.36e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1116 - - vvi:100260233 257.684