Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1115 ATGCTCAAGGATCTGGTCACAGCCTTGAGGTTGGAGGGTCAAAGCTTAGGTGGTTCCTTACCTCCTATTGGGAACTTAACATTCCTAAGAGAGTTGGTGTTGTCCAACAATCTCTTGCACGGTACCATCCCCAGTGACATTGGTCTTTTGCGACGAATGCGGCATCTCAATCTCAGCACAAATTCTCTCCAAGGCGAGATTCCCATTGAGCTGACCAACTGTTCAAACCTCGAGACTGTGGACTTAACAAGGAACAATCTGACAGGGCAGATTCCCTTTCGTGTTGGCAATATGTCGACCAAACTCCTAGTTTTGCGGCTTGGTGGCAACGGTCTAACTGGGGTTATCCCATCTACTTTGGGGAACCTCTCATCTCTTCAACATCTTTCAGTTTCGTTCAATCATTTGGAGGGGAGTATTCCACATGATTTAGGTCGTTTGAAGAGCTTGAAAATTCTATATTTAAGTGTAAACAACCTATCTGGTACGATTCCTCCCTCCCTCTATAATTTTTTTCCTCAACTCCGCAAGTTGGGCATAGCATTGAATCAGTTTACGGGAATAATTCCAGATACGCTATCCAATATTTCAGGACTTGAACTTTTGGATCTAGGACCCAATTATCTAACTGGGCAAGTCCCTGATAGCTTAGGAGTGCTCAAGGATCTGTATTGGTTGAACGTTGAATCCAATAATTTAGGAAGGGGCACGTCTGGGGATTTAAATTTTCTAAATTCTCTGACCAATATCAGCAGTTTAAGGACAATCAGTCTCTACCAAAATAACTTTGGGGGTGTGTTACCCAACTCCATTGTCAATCTCTCAACCCAACTGCAGGCCCTCCACCTAGGAGAGAACAAAATATTTGGAAACATCCCAGAAGAAATTGGAAACCTCATCAACTTAACTACTTTCGATGCAGGTCAGAATTATCTCACTGGTGTCGTTCCCACTTCAGTTGGCAAGCTTCAGAAGTTAGTAACATTGAGGTTAAGTTGGAACAGGCTATCAGGTCTGCTCCCATCCTCCCTCGGAAACTTAAGTCAACTGTTCTACCTTGAAATGAGCAACAACAATTTGGAAGGGAACATTCCTACATCTCTCAGGAACTGCCAAAATATGGAAATTCTTTTACTCGATCACAATAAGTTGAGTGGTGGTGTACCTGAAAATGTCATTGGTCATTTCAATCAGTTGAGATCACTCTACCTACAGCAAAACACATTCACCGGTTCTCTTCCAGCAGATGTTGGTCAACTGAAGAACCTAAATGAGTTACTTGTTTCTGATAACAAGTTGTCAGGGGAAATCCCCACAGAACTTGGTAGCTGTTTGGTACTGGAGTACCTCGACATGGCAAGAAACTCTTTCCAAGGGAACATCCCTCTGTCATTTAGCTCATTGAGAGGTATTCAGTTCCTAGACCTTTCATGCAACAACTTGTCTGGACGGATTCCCAATGAACTAGAAGATCTTGGTTTGTTGAGTTTAAATCTGTCTTATAACTACCTTGAAGGTGAGGTTCCAAGTGGAGGAGTTTTTAAAAATGTGAGCGGGATTTCAATAACTGGGAACAATAAGCTTTGTGGGGGAATCCCTCAACTGCAGCTGCCACCATGCCCTATTGTAGCGTCAGCCAAGCATGGCAAGGGGAAGCATCTTTCAATCAAAATTATTATAGCTATAAGCATTGCTGGTGTTTCTTGCTTGGCTTTCATAGTGGCTTCAGTTCTATTCTATAGGAGAAAAAAGACAACAATGAAGTCCTCTTCCACATCGTTGGGATATGGGTACTTGAGGGTTTCTTACAACGAGCTTCTCAAAGCAACTTGTGGATTTGCCTCGTCCAACTTGATTGGCATGGGAAGTTTTGGTTCTGTGTACAAAGGAGTTCTTAGTCAAGGCAAAAGACTGGTTGCAGTGAAGGTACTGAACCTCCAACAGCATGGAGCTTCCAAGAGTTTCATGGCTGAGTGCAAGGTCCTCCGGCAAATTCGACATCGAAATCTCCTCGGGATCATAACTTCATGTTCAAGTGTGGACAACAAAGGTAGTGATTTTAAGGCTCTAGTTTTTGAGTTCATGCCTAATGGGAACCTAGATAGCTGGCTGCATCATGAATCCAGAAATTTAAGCTTCAGACAAAGATTAGATATTGCAATTGATGTGGCTTGTGCTCTGGATTATCTTCATCACCATTGCCAGACACCAATTGTTCATGGGGATCTAAAGCCAAGCAATGTTCTTCTTGATGACAACATGGTTGCCCATGTTGGGGACTTTGGTTTAACCAAGCTCATTCCTGAAGCCACCGAGATTTCAAGTAGTGATCATCAAACCGGTTCAGCGCTGCTGATGGGATCCATCGGTTATGTGGCTCCAGAATATGGACTAGGTGGCTCCATGTGGCCTCAAGGAGATATGTACAGCTATGGCATCCTTTTGCTGGAGATGTTCACGGGAAAGAGACCAACAGATCACATGTTTTCGGATGGTTTGAACCTTCACAGTTTTTCGAAGATGGCATTGCTTGAACGGGTGATGGAGATTGCCGATTCAAATTTGGTCGGGGAGTCAAGTGAAGCAATCAACAATATAGAAAATCACTGTGATATGGAAGGTAGAACGCAGCATTGCCTTGCTTCAATTGCCAGAATTGGAGTAGCATGTTCTGAAGAATCACCTGGTGATCGATTGGACATCAAGGATGTGGTGATGGAACTGAATATCATTAAGAAAGTGTTTCTTGGGGCAGGAATCCATGGGGAGAGACATATCAGGATGCAACTACCTGCGGAAGGAACATCTCAGCTCGGTGGTGAGTCACTGGTGACTGAAGAGGAAGATGACCAACGTACAGTAGGGAAGCTATGA 2874 0.436 MLKDLVTALRLEGQSLGGSLPPIGNLTFLRELVLSNNLLHGTIPSDIGLLRRMRHLNLSTNSLQGEIPIELTNCSNLETVDLTRNNLTGQIPFRVGNMSTKLLVLRLGGNGLTGVIPSTLGNLSSLQHLSVSFNHLEGSIPHDLGRLKSLKILYLSVNNLSGTIPPSLYNFFPQLRKLGIALNQFTGIIPDTLSNISGLELLDLGPNYLTGQVPDSLGVLKDLYWLNVESNNLGRGTSGDLNFLNSLTNISSLRTISLYQNNFGGVLPNSIVNLSTQLQALHLGENKIFGNIPEEIGNLINLTTFDAGQNYLTGVVPTSVGKLQKLVTLRLSWNRLSGLLPSSLGNLSQLFYLEMSNNNLEGNIPTSLRNCQNMEILLLDHNKLSGGVPENVIGHFNQLRSLYLQQNTFTGSLPADVGQLKNLNELLVSDNKLSGEIPTELGSCLVLEYLDMARNSFQGNIPLSFSSLRGIQFLDLSCNNLSGRIPNELEDLGLLSLNLSYNYLEGEVPSGGVFKNVSGISITGNNKLCGGIPQLQLPPCPIVASAKHGKGKHLSIKIIIAISIAGVSCLAFIVASVLFYRRKKTTMKSSSTSLGYGYLRVSYNELLKATCGFASSNLIGMGSFGSVYKGVLSQGKRLVAVKVLNLQQHGASKSFMAECKVLRQIRHRNLLGIITSCSSVDNKGSDFKALVFEFMPNGNLDSWLHHESRNLSFRQRLDIAIDVACALDYLHHHCQTPIVHGDLKPSNVLLDDNMVAHVGDFGLTKLIPEATEISSSDHQTGSALLMGSIGYVAPEYGLGGSMWPQGDMYSYGILLLEMFTGKRPTDHMFSDGLNLHSFSKMALLERVMEIADSNLVGESSEAINNIENHCDMEGRTQHCLASIARIGVACSEESPGDRLDIKDVVMELNIIKKVFLGAGIHGERHIRMQLPAEGTSQLGGESLVTEEEDDQRTVGKL* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1115 957 Gene3D Ribonuclease Inhibitor 3 72 IPR032675 -
Vvi9g1115 957 SUPERFAMILY L domain-like 251 530 - -
Vvi9g1115 957 SMART serkin_6 613 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1115 957 SUPERFAMILY L domain-like 6 233 - -
Vvi9g1115 957 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 2 187 - -
Vvi9g1115 957 SMART LRR_typ_2 147 171 IPR003591 -
Vvi9g1115 957 SMART LRR_typ_2 323 346 IPR003591 -
Vvi9g1115 957 SMART LRR_typ_2 26 50 IPR003591 -
Vvi9g1115 957 SMART LRR_typ_2 123 146 IPR003591 -
Vvi9g1115 957 SMART LRR_typ_2 420 444 IPR003591 -
Vvi9g1115 957 SMART LRR_typ_2 172 195 IPR003591 -
Vvi9g1115 957 SMART LRR_typ_2 347 371 IPR003591 -
Vvi9g1115 957 SMART LRR_typ_2 468 492 IPR003591 -
Vvi9g1115 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Vvi9g1115 957 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 695 919 - -
Vvi9g1115 957 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 245 909 - -
Vvi9g1115 957 Gene3D Transferase(Phosphotransferase) domain 1 695 916 - -
Vvi9g1115 957 FunFam LRR receptor-like serine/threonine-protein kinase EFR 239 546 - -
Vvi9g1115 957 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Vvi9g1115 957 Pfam Leucine rich repeat 301 360 IPR001611 GO:0005515
Vvi9g1115 957 Pfam Leucine rich repeat 173 233 IPR001611 GO:0005515
Vvi9g1115 957 Gene3D Phosphorylase Kinase; domain 1 596 694 - -
Vvi9g1115 957 MobiDBLite consensus disorder prediction 937 957 - -
Vvi9g1115 957 SUPERFAMILY Protein kinase-like (PK-like) 592 909 IPR011009 -
Vvi9g1115 957 FunFam LRR receptor-like serine/threonine-protein kinase EFR 583 694 - -
Vvi9g1115 957 Gene3D Ribonuclease Inhibitor 145 238 IPR032675 -
Vvi9g1115 957 Gene3D Ribonuclease Inhibitor 73 144 IPR032675 -
Vvi9g1115 957 ProSitePatterns Protein kinases ATP-binding region signature. 619 642 IPR017441 GO:0005524
Vvi9g1115 957 Pfam Protein tyrosine and serine/threonine kinase 617 908 IPR001245 GO:0004672|GO:0006468
Vvi9g1115 957 Gene3D Ribonuclease Inhibitor 239 541 IPR032675 -
Vvi9g1115 957 CDD STKc_IRAK 619 911 - -
Vvi9g1115 957 ProSiteProfiles Protein kinase domain profile. 613 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1115 Vvi-Chr9 17759444 17766637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1115 6 918 Receptor kinase-like Gene Family AT3G47570 46.113 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi9g1115 PK_Tyr_Ser-Thr 9.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1115 - - vvi:100263845 1826.6