Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1060 ATGTTCGATTGTGGTTACAAGTCACAGTATATTGGTGGCCAAAGAGAGAAATTTGTAAGGTTGGATGACCTGGATTCAACATTGTCAGTGCCGTCTGACGGTATGAATAGATGTGCATTTAGTTTAGCAGGACTGACCCCTTGGGGTCGTCCTAACCGCCATTCCTCCAAATCCTTCAGAATAGGAGTGAAAAGGGGTTCTGAAGGGCTCAGGCATATTGGTCGACAACTTAGATCTGAAATAACGAAGGCAATGTTCCCGGAAGATCTTAAAGTATCTGAGAAAAAGATATTTGACCCTCAAGACAAATCCCTCCTACTCTGGAATAGGCTTTTCGTCATATCATGTATTCTTGCTGTATCTGTGGATCCTTTGTTCTTTTATCTTCCTATTGTCGATCACCAATCAAGTTGCCTTGGCATAGATCCCAACTTAGCTGTCACAACTACAACTGTTCGTACGATAATTGATGCTTTCTACCTTATTCGCATGGCTTTCCAATTTCGCACAGCTTATATTGCACCATCATCTAGAGTTTTTGGAAGGGGAGAACTTGTGATAGATCCTGCGGAAATAGCTAAGCGATATTTACAGCGGTTTTTCTTCATTGATTTTCTTGCTGTGTTTCCCCTGCCACAGATTATAGTTTGGAAATTTCTCCGCAAGGGAGAAGGCTTGGAGGTGTTGGAAACTAAACAGCAGCTACTTGTTGTTGTCTTTCTTCAATATATTCCCAGATTTGTCCGGTTTATACCTCTAACTTCAGAACTAAAAAGGACTGCAGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCTGCATACTACTTGCTGTGGTACATGCTTGCCAGTCATATTCTTGGAGCTTTTTGGTACTTATTTGCTGTAGAACGCTATGATGCATGCTGGCATAAAGCCTGTGTTGAGAGTGGGAAATGTGAGGTTAATTTTTTGTACTGTGGGAATCAGCATATGAAAGGTTATGGTGCTTGGCAAAATATCAGCAAGACTGTTATTGGTATGATGTGTTCCCTTAATGATGACAATCCACCATTCAATTATGGAATCTACACCCAGGCTCTAAGTTCCGATATTATTGCCTCTGAGAGTTTCTTTACTAAATATTGTTACTGTTTATGGTGGGGCCTACAAAATTTGAGTACACTTGGACAGGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATTGGAAACATGCAGACCTATCTTCAATCCCTGACTGTTCGGCTGGAGGAGATGAGGATTAAAAGGCGCGACTCGGAGCAGTGGATGCATCATCGCATGCTTCCTCAAGGGTTGAGGGAACGAGTAAGACGGTATGATCAATACAAGTGGTTGGAAACAAGGGGAGTGGATGAGGAGAGCTTGGTCCAGACTCTACCCAAAGACCTCAGGAGGGATATTAAACGCCATCTCTGTCTCAACTTGGTTAGAAGGGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAGGGGACCCAGTAGACGAGATGCTCTTCATCATACGCGGTCGCCTTGAGAGTGTGACTACAGATGGTGGGAGGAGTGGGTTTTTTAACCGAGGCCTACTGAAAGAAGGGGACTTCTGCGGAGAGGAGCTTCTAACTTGGGCTCTGGACCCTAAATCTTCTTCCAACTTACCATCATCCACCCGCACGGTGAAGGCTTTGACTGAGGTCGAGGCTTTTGCCTTAACAGCAGAGGAGTTGAAGTTTGTTGCAGGTCAGTTTAGGCGTCTCCATAGTAGACAGGTTCAACAGACCTTCCGTTTCTACTCACAGCAATGGAGGACTTGGGCTGCCTGCTTTATCCAAGCTGCATGGCGTAGGTATTCCCGCAGGAAAATGGCAGAACTCCGGCGTAAAGAAGAAGTGGAGGAATATGAAGAAGAAGAAGAATATGGTGAAGAAGACAAAGAAGCAAGGAGGTTAGTTGGGGATGGTGGTGGTTCATCCACCCTTGGTGCAACCATCTTAGCTTCCCGGTTTGCAGCTAATGCTCTTCGTGGCATCCAGAGGTTCCGGAGCAGCAGTTCTACAGAGTTGTTTAAACTGCAGAAGCCTCCAGAACCTGACTTCACCATTGAAGACACTGACTGA 2232 0.4467 MFDCGYKSQYIGGQREKFVRLDDLDSTLSVPSDGMNRCAFSLAGLTPWGRPNRHSSKSFRIGVKRGSEGLRHIGRQLRSEITKAMFPEDLKVSEKKIFDPQDKSLLLWNRLFVISCILAVSVDPLFFYLPIVDHQSSCLGIDPNLAVTTTTVRTIIDAFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPAEIAKRYLQRFFFIDFLAVFPLPQIIVWKFLRKGEGLEVLETKQQLLVVVFLQYIPRFVRFIPLTSELKRTAGVFAETAWAGAAYYLLWYMLASHILGAFWYLFAVERYDACWHKACVESGKCEVNFLYCGNQHMKGYGAWQNISKTVIGMMCSLNDDNPPFNYGIYTQALSSDIIASESFFTKYCYCLWWGLQNLSTLGQGLQTSTYAGEVLFSITLAILGLILMALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRMLPQGLRERVRRYDQYKWLETRGVDEESLVQTLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLQPSLFTEKTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKALTEVEAFALTAEELKFVAGQFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRYSRRKMAELRRKEEVEEYEEEEEYGEEDKEARRLVGDGGGSSTLGATILASRFAANALRGIQRFRSSSSTELFKLQKPPEPDFTIEDTD* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1060 743 Gene3D - 111 430 - -
Vvi9g1060 743 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Vvi9g1060 743 MobiDBLite consensus disorder prediction 674 693 - -
Vvi9g1060 743 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 87 737 - -
Vvi9g1060 743 MobiDBLite consensus disorder prediction 722 743 - -
Vvi9g1060 743 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
Vvi9g1060 743 SMART cnmp_10 505 633 IPR000595 -
Vvi9g1060 743 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
Vvi9g1060 743 Gene3D Jelly Rolls 503 623 IPR014710 -
Vvi9g1060 743 Pfam Ion transport protein 107 432 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi9g1060 743 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Vvi9g1060 743 Pfam Cyclic nucleotide-binding domain 526 615 IPR000595 -
Vvi9g1060 743 CDD CAP_ED 505 636 IPR000595 -
Vvi9g1060 743 Gene3D Helix hairpin bin 432 496 - -
Vvi9g1060 743 SUPERFAMILY cAMP-binding domain-like 435 625 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1060 Vvi-Chr9 16472097 16483484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1060 6 740 Ion Channels AT1G15990 73.925 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1060 K05391 - vvi:100241716 1455.27