Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1048 ATGGCTATGGATAGTTCTAATTGGATGGCCGCTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCATTGAAAGAAGAAGAGGTGAGTGTTCTTGTGGAGAAATTGAACCAAGTGAACGCAGAAAACAGGAAGCTAACGGAAATGCTAACAGTGATGTGTGAGAATTACAACGCTTTGAGAAGCCATGTGATGGAGTATATCAGCAAGAACCCCGAGAGGGAATCTCCTTCATCAAGAAAAAGGAAGGCAGAGAGCAGCAATAATAACAGTAACAACAATGGAGTCGTTGGGAACTCAGAAAGCAGCTCAAGCGATGAAGATTCATTCAAGAAACCAAGGGAGGAGACTATTAAGGCCAAAATCTCAAGGGTCTATACGCGAACCGATGCATCAGATACCAGCCTTGTGGTGAAGGATGGATACCAGTGGAGGAAATATGGCCAAAAGGTCACCAGAGACAACCCCTCTCCGAGAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCGAGCATAATCATCCACACCCTGGTCGAATTGAGCCCACATCAGGTGCAAACCGATCCGTGAACCTCGGTTCAGTCCCCTGTGCATCCTCACTCAGCTCATCAGGACCTGCCATTACTCTTGACCTCACAAAGCCCAAGTCTAATTCTGATGCCAAGGCTTCAAAGTCCCCTGAACTTCATCACTTCTTGGTGGAACAGATGGCCTCTTCGTTGACCAAAGATCCAAGCTTCAAGGCTGCACTTGCAGCCGCCATTTCAGGAAGAATTCTCCACCATAATCAAACTGAAAAATGGTGA 936 0.4626 MAMDSSNWMAASLDLNANPLRLFDDTPKKEVQDDFTGLGLKVVSLKEEEVSVLVEKLNQVNAENRKLTEMLTVMCENYNALRSHVMEYISKNPERESPSSRKRKAESSNNNSNNNGVVGNSESSSSDEDSFKKPREETIKAKISRVYTRTDASDTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPHPGRIEPTSGANRSVNLGSVPCASSLSSSGPAITLDLTKPKSNSDAKASKSPELHHFLVEQMASSLTKDPSFKAALAAAISGRILHHNQTEKW* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1048 311 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi9g1048 311 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi9g1048 311 SUPERFAMILY WRKY DNA-binding domain 156 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi9g1048 311 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi9g1048 311 FunFam WRKY transcription factor 40 144 221 - -
Vvi9g1048 311 Gene3D WRKY domain 143 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi9g1048 311 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 46 303 IPR044810 GO:0003700
Vvi9g1048 311 MobiDBLite consensus disorder prediction 104 125 - -
Vvi9g1048 311 MobiDBLite consensus disorder prediction 90 136 - -
Vvi9g1048 311 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1048 Vvi-Chr9 16094300 16095834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1048 33 310 WRKY Transcription Factor Family AT1G80840 55.034 8.38e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi9g1048 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1048 - - vvi:100253480 547.354