Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1010 ATGGACATTAAAGGCTTCAAAAAGGGGGAGATCATGCATTTAGAAACCCCATTAGCAATGTTGGAAAAACCAGATGCACCCTGCCCTCTTGTCGAGATCCTCTTGCTTTGTGGTCCCCCAGGACTTGGGAAGACAACACTTGCACATGTCGCTGCTAAGCATTGTGGATACCGTGTGGTGGAGATAAATGCTAGTGATGATCGGTCATCTTCAACAATTGAAGCTAAAATCCTTGATGTGGTCCAGATGAACTCTGTCATGGCAGATTCGAAGCCCAATTGTTTGGTAATTGATGAAATAGATGGAGCTCTTGGTGATGGCAAGGGTGCTGTGGAGGTTATTCTAAAAATGGTTTCTACTGAAAGGAAAGCTGATAATAAGAAGGGAAATGTTGCTAAAGTGATTTGCATATGTAATGATCTATATGCACCTGCCCTGAGGCCTATGCGTCAGGTAGCAAATGATTGCTATCATTACAAGGTTCACATTTTTGTTCAACCGACAGTGAGTCGTGTGGTAAGCAGACTCAAATATATATGTAATATGGAAGGCCTAAAGACAAATTCCACGGCACTTGCTGTACTTGCAGAGTATACTGAATGTGACATCCGTTCGTGCTTGAACACACTACAGTTTCTCAACAAGAAGAATCAAACCCTCAATGTGTTTGAGATCAGTTCCCAAGTGGTAGGTCAAAAGGACATGTCTAGAAGCATCTTTGATATCTAG 729 0.4225 MDIKGFKKGEIMHLETPLAMLEKPDAPCPLVEILLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMADSKPNCLVIDEIDGALGDGKGAVEVILKMVSTERKADNKKGNVAKVICICNDLYAPALRPMRQVANDCYHYKVHIFVQPTVSRVVSRLKYICNMEGLKTNSTALAVLAEYTECDIRSCLNTLQFLNKKNQTLNVFEISSQVVGQKDMSRSIFDI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1010 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 220 IPR027417 -
Vvi9g1010 242 Gene3D - 7 160 IPR027417 -
Vvi9g1010 242 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 27 242 - -
Vvi9g1010 242 CDD HLD_clamp_RFC 167 222 - -
Vvi9g1010 242 CDD AAA 34 151 - -
Vvi9g1010 242 SMART AAA_5 30 162 IPR003593 GO:0016887
Vvi9g1010 242 Gene3D - 167 236 - -
Vvi9g1010 242 FunFam Chromosome transmission fidelity protein 18 167 234 - -
Vvi9g1010 242 Pfam ATPase family associated with various cellular activities (AAA) 34 140 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1010 Vvi-Chr9 14596804 14611850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1010 26 211 Core DNA Replication Machinery Family AT1G21690 30.928 2.89e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1010 K11269 - vvi:100244400 378.637