Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0973 ATGAATCTCCATACTATCATGTCCTTGAACCAAATGGATAATCTGAAGAAAGTGATGCAAACCCATTACTCTGTTCCCTCCCGGGTACCTAATTTCTTGGGTGCTGAATCAGTTGGTGAATACTCATTGTATGGAAAAGAGTCACCTGCAGGTATTCCTCCATGTATACAAAGAGAACAAGTCCTCAATTCCCTTGCACAACTGAGTCTGTTTAAACACCATATTTTGAATACAAGCCCTGTGTCCCACAAACCTTTCCCTATGGGATCTTATGTCATGAATCCACATGCCATGTCTACTCAGTCTTCTATGTTCCCTGCCGCTTTATATTCTCCATCTTCGACCAGCTTTGAGACCCATCAGCACCTTGGAAATCCACACTTTCTTCCACAATATCCCCCGTGCGTTTCTCCTGCTAATTCATCAGAATCTCCCCTGCTTTTGGGTGACGATGTAGCTGATAAATATGACAAAGAGAATTCAGGGGACTTGATGAAGGACTTCTTTGGCATCCCGGAGGAAAGTTCTGATCAAAGCTTGCAAGGTTTGGATGCTGAGAAGGACAGTTTGACATTAATGGACCTGTTGGATCTGCGATATTTGTCTGAAGAGCTAGACATACCTGTAAGCAAGAAAGGGGAAAATCCCAGTGTTGATGAAATATGCCAAGCACCAAACGTTTCATCAATCCCTCCCCAAAGCCACCCACACGCTTTGGTCCCGCCTATGGATAATCAAGTTCCCGAGGCTGCAGCTGCCCAGAAGCAAAGAATAAGGTGGACACCCGAGCTCCATGAGCTTTTCTTAGATGCAGTCAGCAAACTTGGTGGCCCTGACAAGGCAACTCCAAAGGGTATATTGAGGCTTATGAATGTTGAAGGTTTAAACATCTGCCATGTGAAGAGCCACTTGCAGAAATACCGACTAGCCAAGGCTGTGCAGATGAAACAAGGTAAAAGATATAATAATACTAGATGA 978 0.4427 MNLHTIMSLNQMDNLKKVMQTHYSVPSRVPNFLGAESVGEYSLYGKESPAGIPPCIQREQVLNSLAQLSLFKHHILNTSPVSHKPFPMGSYVMNPHAMSTQSSMFPAALYSPSSTSFETHQHLGNPHFLPQYPPCVSPANSSESPLLLGDDVADKYDKENSGDLMKDFFGIPEESSDQSLQGLDAEKDSLTLMDLLDLRYLSEELDIPVSKKGENPSVDEICQAPNVSSIPPQSHPHALVPPMDNQVPEAAAAQKQRIRWTPELHELFLDAVSKLGGPDKATPKGILRLMNVEGLNICHVKSHLQKYRLAKAVQMKQGKRYNNTR* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0973 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 312 IPR017930 -
Vvi9g0973 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 243 316 IPR044848 GO:0003700
Vvi9g0973 325 Gene3D - 254 312 - -
Vvi9g0973 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 310 IPR006447 GO:0003677
Vvi9g0973 325 FunFam Myb family transcription factor 254 312 - -
Vvi9g0973 325 SUPERFAMILY Homeodomain-like 253 310 IPR009057 -
Vvi9g0973 325 Pfam Myb-like DNA-binding domain 259 308 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0973 Vvi-Chr9 13610986 13612362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0973 105 324 G2-like Transcription Factor Family AT3G13040 42.735 4.47e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi9g0973 Myb_DNA-binding 8.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0973 - - vvi:100244783 642.499