Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0955 ATGGCTTCCACGCCGGTGCAACCACAGTTCATTGCAAGCACTGGGAATAGAAGTTTATCAAATGCGCTACTCATCGAGAATCCCGAATCTGATCAGATTGTTGTGCCTGATAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATTTTGAGACTGATCTCCAATCAGGAGCACAGTACAAGTATGAGTTACTTTGGATCATATTAGTGGCCTCATGTGCTGCCCTCATTATTCAATCCTTAGCAGCCAACCTGGGGGTAGTAACAGGAAAGCATTTAGCAGAGCACTGCAGAATTGAATATCCAAAGGTGCCTAACTTCATCCTATGGGTTCTTGCTGAAATTGCTGTAGTTGCATGTGACATTCCTGAAGTGATTGGAACAGCCTTTGCATTGAACATGCTCTTCAATATTCCTGTGTGGTGTGGTGTTCTTCTTACAGGGCTTAGTACATTGGTTCTTCTAGCTTTACAGCAATATGGGGTTAGAAAACTTGAATTCTTTATTGCTTTTCTCGTACTTACAATTGCTGCATGCTTCTTTGTGGAGCTTGGCTATGCAAAACCCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCGCACAATCTCTTCCTTCACTCAGCATTGGTGCTTTCCAGGAAAATACCACGATCTGTTCGTGGCATCAAAGAGGCTTGCAGATTTTATATGATAGAAAGTGGCTTTGCTCTTATGGTGGCATTTCTCATTAATGTCTCTGTTATATGTGTAAGCGGTGCAGTTTGCAGTTCCTCAAATTTGAACCTGGATGATCAGGAGAGTTGCAAAGATTTGGACCTGAACAAAGCCTCATTTTTACTCAGAAATGTATTAGGCAAATGGAGCTCAAAGCTTTTTGCTATTGCTTTGCTAGCATCTGGTCAGAGTTCTACGATCACGGGAACATATGCAGGGCAATATGTAATGCAGGGCTTTCTTGATTTACGTCTACAACCATGGATCCGGAATTTTTTAACTCGATGCTTGGCAATAATCCCAAGTTTAATTGTTGCAATTATTGGTGGCTCGTCTGGGGCTGGAAAGCTGATTATCATTGCATCTATGATCTTATCATTTGAACTCCCTTTTGCTCTCATTCCACTTCTCAAGTTCACCAGCTGCAAGACTAAGATGGGTGCATATGTCAATTCGACCATGATTACAGCCATCACTTGGATCATCGGTTCCCTTCTCATGGCCATAAATATATACTATCTTGCATCCAGTTTCATCAAGTTGCTTCTTCACAGCCATTTAAAGCTGGTGGCTGCCGTGTTTGCTGGAATAATTGGATTTTCAGGTATGATAGTGTATGTGTGTGGTATTGGATACCTGGTGTTCCGAAAAAATAAGAAGGCTACACACCTTTTGGCATTAGCAACAGCAGAAAATGGAGAGCTGACAAATGATGTAGGTGGTGCATCAATGGATTGCCTCCCAAGAGAAGACATAGTTAGCATGCAGTTGCCTCAGAGAAGGGTTACGGTAGATGTTGACTGA 1626 0.4213 MASTPVQPQFIASTGNRSLSNALLIENPESDQIVVPDRKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRIEYPKVPNFILWVLAEIAVVACDIPEVIGTAFALNMLFNIPVWCGVLLTGLSTLVLLALQQYGVRKLEFFIAFLVLTIAACFFVELGYAKPNSSEVLRGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESGFALMVAFLINVSVICVSGAVCSSSNLNLDDQESCKDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLQPWIRNFLTRCLAIIPSLIVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSCKTKMGAYVNSTMITAITWIIGSLLMAINIYYLASSFIKLLLHSHLKLVAAVFAGIIGFSGMIVYVCGIGYLVFRKNKKATHLLALATAENGELTNDVGGASMDCLPREDIVSMQLPQRRVTVDVD* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0955 541 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 36 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 NCBIfam Nramp family divalent metal transporter 49 416 - -
Vvi9g0955 541 Pfam Natural resistance-associated macrophage protein 64 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 PRINTS Natural resistance-associated macrophage protein signature 151 170 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 PRINTS Natural resistance-associated macrophage protein signature 396 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 PRINTS Natural resistance-associated macrophage protein signature 176 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 PRINTS Natural resistance-associated macrophage protein signature 226 249 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 PRINTS Natural resistance-associated macrophage protein signature 364 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 PRINTS Natural resistance-associated macrophage protein signature 336 355 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 PRINTS Natural resistance-associated macrophage protein signature 123 149 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 Hamap Divalent metal cation transporter MntH [mntH]. 36 452 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g0955 541 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 43 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0955 Vvi-Chr9 13243070 13257094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0955 12 534 Inorganic Solute Cotransporters AT1G15960 79.619 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0955 K21398 - vvi:100256746 1023.08