Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0953 ATGGCTAAGATTAGCCAAGACAAGTTAGACTACTCAAGCCTGCTCCATGGCAAATACGAGCTAGGCCGCCTGCTTGGCCATGGCACCTTTGCAAAGGTGTACCATGCCAGGAACTTAAGAAATGGGGAGAGTGTAGCCATGAAAGTGGTTGCGAAAGACAAGGTGATAAAGGTGGGGATGATGGAGCAAATGAAGCGTGAGATATCGGTGATGAAGAAGGTGAGCCACCCCAACATCGTCCAGCTCCATGAAGTCATGGCAAGCAAGTCCAAGATATACCTGGCCATGGAATATGTTCGTGGGGGTGAGCTCTTTTCCAAGATTGCCAAAGGCAGACTGCGGGAGGATGCAGCCAGGTCCTATTTCCAACAATTGATTTCAGCCGTGGAGTTCTGCCACAGCCGCGGGGTTTTTCACCGGGACTTGAAGCCTGAGAACCTCCTCCTGGATGAACAGGGGAACCTCAAGGTCACTGATTTTGGGCTGTGCGCGCTGTCGGATCACTTGAAGCAGGATGGTTTGCTGCACACCGCCTGTGGGACTCCGGCCTATGTTGCGCCGGAGGTGATTGCGAAGAGGGGCTACGATGGCGCAAAGGCAGATATATGGTCTTGTGGGGTGATACTGTTCGTGCTTATGGCTGGATTTTTGCCCTTCCAGGATGACAACCTTATTGCTATGTACAAAAAGATCTACAGAGGGGACTTCAAGTGTCCGCCTTGGTTCTCACCTGAAGCGCGCAGAGTTGTTTGTAGGCTGCTTGATCCAAACCCCAATACCAGAATCACCATTTCCAAGCTCAAGGAAACATCCTGGTTTAAGAAAACAAAGCCTAAAAATGTGCAGACTACTGCTAGTGGTGTTGCCGTCGAAGAGGAAATGGAAGTGAAAGAGAAGGTGCCTGAGGCTCTTAACGCCTTTCACATAATCTCGTTATCGGAGGGGTTCGATCTGTCGCCTCTGTTTGAGGAGAAGAAGAAGGAGGAGGAAGAGGAGATGAGGTTTGCGACGTTAAAAAAGTCGATGAGCGACGTGGTATTGAAGCTAGAGGAGCTGACCAAGCCTGGGATGTTTCCGATGACTCCAGCTCTCGGAGGAGACAGTGTGGATCAGTACAATCAGAGTTGCGGCAAGGAGTTGAGACCAGCAGTGGAGGGCATAGGCTGGACAGCAACCCAAAATTCGGCAGTTGCTTGA 1197 0.5079 MAKISQDKLDYSSLLHGKYELGRLLGHGTFAKVYHARNLRNGESVAMKVVAKDKVIKVGMMEQMKREISVMKKVSHPNIVQLHEVMASKSKIYLAMEYVRGGELFSKIAKGRLREDAARSYFQQLISAVEFCHSRGVFHRDLKPENLLLDEQGNLKVTDFGLCALSDHLKQDGLLHTACGTPAYVAPEVIAKRGYDGAKADIWSCGVILFVLMAGFLPFQDDNLIAMYKKIYRGDFKCPPWFSPEARRVVCRLLDPNPNTRITISKLKETSWFKKTKPKNVQTTASGVAVEEEMEVKEKVPEALNAFHIISLSEGFDLSPLFEEKKKEEEEEMRFATLKKSMSDVVLKLEELTKPGMFPMTPALGGDSVDQYNQSCGKELRPAVEGIGWTATQNSAVA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0953 398 Gene3D Kinase associated domain 1, KA1 298 364 - -
Vvi9g0953 398 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0953 398 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0953 398 Pfam NAF domain 301 358 IPR004041 GO:0007165
Vvi9g0953 398 SUPERFAMILY Protein kinase-like (PK-like) 16 282 IPR011009 -
Vvi9g0953 398 FunFam Non-specific serine/threonine protein kinase 11 98 - -
Vvi9g0953 398 FunFam Non-specific serine/threonine protein kinase 10 299 - -
Vvi9g0953 398 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Vvi9g0953 398 Gene3D Transferase(Phosphotransferase) domain 1 99 280 - -
Vvi9g0953 398 Gene3D Phosphorylase Kinase; domain 1 13 98 - -
Vvi9g0953 398 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 355 - -
Vvi9g0953 398 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0953 398 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
Vvi9g0953 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vvi9g0953 398 CDD STKc_SnRK3 18 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0953 Vvi-Chr9 13197364 13198560 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0953 12 392 CBL-interacting serine-threonine protein kinases AT4G30960 63.850 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi9g0953 Pkinase 5.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0953 - K07198 vvi:100261839 773.081