Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0951 ATGGAGGGGCAGAAGAACCAAGTTGTTGATGAAGCAAGAAGCATATTGTTTAAGAAATACGAGATGGGAAGGCTTCTTGGGCAGGGCACCTTCGCAAAGGTGTACCACGCGAAGAGGCTTGGGAGTGGGGACAGCGTTGCCATCAAGGTGATCAACAAGGACCACGTGAAGAAACAGGGCATGATGGAGCAGATCCAGCGCGAAATCTCTGTTATGCGCCTTGTTCGCCACCCCAATGTGGTGGAATTGAAGGAAGTGATGGCCACAAAGACCAAAATCTTCTTCGCCATGGAGTTCGTAAAGGGTGGTGAATTGTTCGCAAAAGTGACCAAGGGAAGGCTCAAAGAGGATTCGGCTAGAAAATACTTCCAGCAGCTTGTCAGCGCCATCGATTTTTGCCACAGCAGAGGCGTTTCCCACCGCGATCTCAAACCCGAAAACTTGCTCCTCGATGAAAACGAGAACTTGAAAGTCTCCGATTTTGGGCTGTCGTCGTTGCCGGAGCAGCTCAGAAATGATGGATTGCTGCACACACAGTGTGGGACGCCAGCATACGTGGCGCCGGAGGTGTTGAGGAAGCGAGGCTACGACGGAGCCAAGGCCGATACATGGTCTTGTGGGGTTATTCTCTATGTTCTGCTTTGCGGCTTTCTTCCATTTCGAGCAGAGAATGTTATGAAGATGTACACCAAGGTTTTCAAGGCAGAGTTCGAGTTTCCTCCATGGGTTTCGACCCAAGCAAAGCGGCTGATATCGAAGCTCCTCGTTGCTGATCCCGAGAAACGAATCACCATTTCTGCGATCATGGAGGATCCTTGGTTTCAGAAAGGTTTCAGGAAGCCTATTGCCTTTTCAATTGAAGAACAAGAGAACAACGAGGAGTGGCAAGGGTGTAGAGGGGAGGTGGAAATGGTGAGAACAAAGTCCTCACCACCTTTCTACAACGCCTTCGAGTTCATCTCCTCAATGTCATCGGGCTTCGACTTGTCCAGCTTGTTCCTGAGCAAGAGGAAGTCGGGCTCCATGTTCACCTCCAAGTGCTCCGCCTCAACCATCATGGCCAAGCTCGAATCACTGGCTAAGACGCTCAATTTCAGAGTGGTGAACGTGAAGGAGTTCAAGGTGAAAATGCAGGGGCTAGTGGATGGGCGGAAGGGGAAGTTGTCGGTAACGGCCGAGGTGTTCGAGGTGGCGCCGGCAGTGGCCTTGGTCCAATTCTCCAAGTCCGCCGGTGACACCCTGGAGTACACCAAGTTTTGTGAGGAGGAGGCCAGGCCTGCTCTCAAAGACATTGTTTGGAGTTGGCAAGGTGAAAATGAGTGCATAAATGATAATTTGTTCTCTGTTTGTATTTTTGGCGAGTCTATGACATGTGAGGAATGGTAG 1386 0.5065 MEGQKNQVVDEARSILFKKYEMGRLLGQGTFAKVYHAKRLGSGDSVAIKVINKDHVKKQGMMEQIQREISVMRLVRHPNVVELKEVMATKTKIFFAMEFVKGGELFAKVTKGRLKEDSARKYFQQLVSAIDFCHSRGVSHRDLKPENLLLDENENLKVSDFGLSSLPEQLRNDGLLHTQCGTPAYVAPEVLRKRGYDGAKADTWSCGVILYVLLCGFLPFRAENVMKMYTKVFKAEFEFPPWVSTQAKRLISKLLVADPEKRITISAIMEDPWFQKGFRKPIAFSIEEQENNEEWQGCRGEVEMVRTKSSPPFYNAFEFISSMSSGFDLSSLFLSKRKSGSMFTSKCSASTIMAKLESLAKTLNFRVVNVKEFKVKMQGLVDGRKGKLSVTAEVFEVAPAVALVQFSKSAGDTLEYTKFCEEEARPALKDIVWSWQGENECINDNLFSVCIFGESMTCEEW* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0951 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vvi9g0951 461 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0951 461 Gene3D Transferase(Phosphotransferase) domain 1 11 317 - -
Vvi9g0951 461 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0951 461 Pfam NAF domain 311 367 IPR004041 GO:0007165
Vvi9g0951 461 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vvi9g0951 461 CDD CIPK_C 315 429 - -
Vvi9g0951 461 SUPERFAMILY Protein kinase-like (PK-like) 16 275 IPR011009 -
Vvi9g0951 461 ProSiteProfiles NAF domain profile. 309 334 IPR018451 GO:0007165
Vvi9g0951 461 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 429 - -
Vvi9g0951 461 CDD STKc_SnRK3 19 273 - -
Vvi9g0951 461 Gene3D Kinase associated domain 1, KA1 318 434 - -
Vvi9g0951 461 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Vvi9g0951 461 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Vvi9g0951 461 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0951 461 FunFam Non-specific serine/threonine protein kinase 13 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0951 Vvi-Chr9 13115765 13117457 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0951 15 446 CBL-interacting serine-threonine protein kinases AT5G25110 69.495 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi9g0951 Pkinase 3.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0951 - - vvi:100255067 854.744