Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0950 ATGGCAGATGAGGAGCCAAAACCCCTCACATACATACCTGAGGTGATTTTGAAGAAAAGAAAGAGCAATGAAGAGTGGGCGATCAAGAGGAGACAACAATTGGAGGAGAGGAATTTGAGAAGCAAACAAAATAAGGCTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATTGAGGAAAATCTTTGATGGTGTTTTGGTGAAGGCCAATGAAGGAATTCTGGAAATGCTGCAAAAGGTGGAGCCATACGTTGCATATGGATATCCTAATCTCAAGAATGTGAGGGAGCTGATTTACAAGAAGGGTTTTGCAAAGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATTGCCAATGTTGGTCCACATTTTAAGGAGGTTAATAGTTTCTTGTGGCCCTTTACACTTAACAAGCCGGAAGGTGGTTTTCAGGGGAAGAAAAAGCTATTCAAGGAAGGAGGAGACGCGGGTAATCGTGGGGATAAAATCAATGAACTAATCGGTAAAATGAATTAG 741 0.4035 MADEEPKPLTYIPEVILKKRKSNEEWAIKRRQQLEERNLRSKQNKAFNLKTAEQYIQEYRNRELDLIQMKHRGKKRKLSLETLDSKLLFVIRIQGKNDMHPKTRKILYFLRLRKIFDGVLVKANEGILEMLQKVEPYVAYGYPNLKNVRELIYKKGFAKIEGQKVPLTDNNIIEQALGKHGIMCIEDIVHEIANVGPHFKEVNSFLWPFTLNKPEGGFQGKKKLFKEGGDAGNRGDKINELIGKMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0950 246 NCBIfam 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vvi9g0950 246 PANTHER 60S RIBOSOMAL PROTEIN L7 9 246 IPR039699 -
Vvi9g0950 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Vvi9g0950 246 FunFam 60S ribosomal protein L7 87 191 - -
Vvi9g0950 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Vvi9g0950 246 Gene3D - 192 246 IPR036919 -
Vvi9g0950 246 Gene3D - 87 191 IPR036919 -
Vvi9g0950 246 Pfam Ribosomal L30 N-terminal domain 12 76 IPR012988 -
Vvi9g0950 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0950 Vvi-Chr9 13101281 13107981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0950 1 246 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 56.275 1.03e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0950 K02937 - vvi:100267028 497.278