Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0945 ATGGACACAGACCATGATGTTCCATCAGCCCCCTCAACACCTGTAACTCCATCCACACCTGGGGCTCCTCTCTTTCATGGGTTCAAGGCACACGGAACCAGTAGTGGCAATGGTAGAAGATCTTTTCTCAGGAGCTGCAAGTGCTTCAGTGTTGAACAGTGGGCCATGGAAGAAGGCAGCTTGCCTACTCTCTCTTGCTCATGGCCTACTCCACCACTTCCTGTCTCACTTGCCAGAAAGATGGGAGCTGAGTTCATAGGCACCTTCATGCTGATTTTTGGAGGGGCAGCCACAGGAATTGTGAACCAAAAGACACAAGGCTCCGAGACCCTCCTGGGGCTGGCAGCCTCCACCGGGCTGGCGGTGATGGTCATAATACTCTCTACCGGTCACATCTCAGGCGCCCACCTCAACCCTGCTGTGACCATTGCCTTTGCTGCGCTAAGGCACTTCCCATGGAAGCACGTCCCAGTCTACATAGGATCACAATTGATGGGATCATTGTGTGCTGCATTTGCACTGAAAGGGATATTCAACCCAGTAATGGATGGAGGCGTGACGGTTCCTTCTCATTCAGGGGCGTACGGTCAGGCTTTCGCTTTGGAGTTCATCATTTCCTTCTTCCTCATGTTTGTTGTCACTGCTGTCGCCACCGACACCAGAGCAGTGGGATCGCTGGCGGGCATCGCGGTGGGAGGCACTGTCATGCTCAATATTCTCATCGCCGGGGAAACCACTGGAGCATCCATGAACCCAGTGAGAACACTGGGGCCAGCCATAGCTGTAAACAACTTCAAAGCCATATGGGTTTACCTCACTGCACCCATCCTTGGAGCTCTGTGTGGGGCAGGTGTCTACACAGCCGTGAAGCTTCCAGAGGAAGATGGTAACACTCACTCTCTCAACAAGTCCATGACGGTGCAGAGCGAAGGTGACCAGTCAATGTCATCTGTAGGCCTACAACATAAATTCAGAAACTTCACTAGAAAGGTAAGGCAGTTCTTTGAAGAGATCAGAAACAACAGCCCAATGGATCGAGATCCGGCCAGTACATACAATACATAG 1065 0.5202 MDTDHDVPSAPSTPVTPSTPGAPLFHGFKAHGTSSGNGRRSFLRSCKCFSVEQWAMEEGSLPTLSCSWPTPPLPVSLARKMGAEFIGTFMLIFGGAATGIVNQKTQGSETLLGLAASTGLAVMVIILSTGHISGAHLNPAVTIAFAALRHFPWKHVPVYIGSQLMGSLCAAFALKGIFNPVMDGGVTVPSHSGAYGQAFALEFIISFFLMFVVTAVATDTRAVGSLAGIAVGGTVMLNILIAGETTGASMNPVRTLGPAIAVNNFKAIWVYLTAPILGALCGAGVYTAVKLPEEDGNTHSLNKSMTVQSEGDQSMSSVGLQHKFRNFTRKVRQFFEEIRNNSPMDRDPASTYNT* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0945 354 Gene3D Glycerol uptake facilitator protein. 70 300 IPR023271 -
Vvi9g0945 354 FunFam Aquaporin NIP2-1 68 301 - -
Vvi9g0945 354 NCBIfam MIP family channel protein 83 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0945 354 PANTHER AQUAPORIN NIP2-1 45 300 IPR034294 -
Vvi9g0945 354 MobiDBLite consensus disorder prediction 1 27 - -
Vvi9g0945 354 PRINTS Major intrinsic protein family signature 232 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0945 354 PRINTS Major intrinsic protein family signature 269 289 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0945 354 PRINTS Major intrinsic protein family signature 118 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0945 354 PRINTS Major intrinsic protein family signature 201 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0945 354 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0945 354 PRINTS Major intrinsic protein family signature 155 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0945 354 SUPERFAMILY Aquaporin-like 75 295 IPR023271 -
Vvi9g0945 354 CDD MIP 79 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0945 354 ProSitePatterns MIP family signature. 136 144 IPR022357 -
Vvi9g0945 354 Pfam Major intrinsic protein 76 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0945 Vvi-Chr9 13012090 13014358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0945 4 295 Major Intrinsic Protein MIP AT1G80760 73.244 5.89e-147 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0945 K09874 - vvi:100258460 690.263