Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0942 ATGACACAACACGACATGATCGACCTACGAGCTTATGGGTCATGCCAAACCACTTATTTGGTTTGCATGAGTCCACCCACCCCGACACAATTTTTCAATGGGTCGTATTGGTCTAGCACATTGGGCAAAAATGACCCACTAAACATTGGGCCATGTCAGCTGACATGGCCATGGGACACCTCTATAAATACATATGGAAAAGGTTTCTGTTATCCTCATCAAACAAGGAAGGAGGTAGATTTGAACATCCACAAGAAAATGTCTGGTGAAGAGGTTGTTGTTGCAGTTGAAACATCAGCTCCAGCTCCAGCTCTAGGTGAGCCCATGGACCTCATGACAGCCTTGCAGCTTGTGTTGAGGAAATCACTGGCTCATGGTGGGCTTGCTCGAGGCCTTCACGAAGGTGCAAAGGTGATTGAGAAACATGCTGCTCATCTGTGTGTTTTGGCAGAGGATTGCAACCAACCAGACTATGTTAAACTGGTGAAGGCACTTTGTGCTGATCACAATGTTAGCTTGATAACTGTTCCTAGTGCTAAGACGCTGGGCGAGTGGGCTGGGTTATGTAAGATTGACTCCGAAGGGAAGGCCAGGAAAGTGGTGGGCTGCTCCTGTGTTGTCGTTAAGGACTTTGGGGAGGAAACTGAAGCTATGAATGTTGTCCAGCAGCAGGTGAAGTCTCACTAA 687 0.4745 MTQHDMIDLRAYGSCQTTYLVCMSPPTPTQFFNGSYWSSTLGKNDPLNIGPCQLTWPWDTSINTYGKGFCYPHQTRKEVDLNIHKKMSGEEVVVAVETSAPAPALGEPMDLMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAHLCVLAEDCNQPDYVKLVKALCADHNVSLITVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEETEAMNVVQQQVKSH* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0942 228 Gene3D - 93 228 IPR029064 -
Vvi9g0942 228 PRINTS Ribosomal protein S12E family signature 173 194 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vvi9g0942 228 PRINTS Ribosomal protein S12E family signature 132 148 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vvi9g0942 228 PRINTS Ribosomal protein S12E family signature 198 211 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vvi9g0942 228 PRINTS Ribosomal protein S12E family signature 118 131 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vvi9g0942 228 SUPERFAMILY L30e-like 108 226 IPR029064 -
Vvi9g0942 228 PANTHER 40S RIBOSOMAL PROTEIN S12 102 228 - -
Vvi9g0942 228 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 114 207 IPR004038 -
Vvi9g0942 228 ProSitePatterns Ribosomal protein S12e signature. 114 132 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vvi9g0942 228 FunFam 40S ribosomal protein S12 94 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0942 Vvi-Chr9 12954482 12958767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0942 107 228 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.590 4.69e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0942 K02951 - vvi:100255187 285.419