Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0853 ATGGCTGGACAACAACAGCGTTATCGAGGCGTCCGACAGAGGCATTGGGGCTCTTGGGTCTCTGAAATCCGCCACCCCCAACTGAAGACTAGAATATGGCTCGGCACATTCGAAACGGCGGAGGATGCGGCGCGAGCCTACGACGAAGCAGCCAGGCTCATGTGTGGGCCAAGAGCTCGGACCAACTTCACTTACAATTCCGATGACTCACAATCATCTTCTTCTAAGCTTCTCTCAGCAACTCTCACTGCTAAATTGCAGAGGTGCTACATGGCATCACCTCAAGGGGCCAAAATCCCTTTAGCTACAGATTTCCAACAACCTCACTACTCTCCAAATTTTGGCACAGTTGATGGCATGGCCGCAAGAAATTGCCAGGTGAGTATCGGATCTCCGGCGAAGAGACGACGGCAAGTACAGGGAAAATGGGTGGGTGGGGAAGATGAGGAATTCAAAGTTCTTGAAGATGATCACATTGAGCAGATGATTGAGGAGTTGCTTCATTCTGGATCTATTGAGCTTGGTTTTGTGTAA 534 0.5 MAGQQQRYRGVRQRHWGSWVSEIRHPQLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFTYNSDDSQSSSSKLLSATLTAKLQRCYMASPQGAKIPLATDFQQPHYSPNFGTVDGMAARNCQVSIGSPAKRRRQVQGKWVGGEDEEFKVLEDDHIEQMIEELLHSGSIELGFV* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0853 177 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vvi9g0853 177 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vvi9g0853 177 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vvi9g0853 177 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vvi9g0853 177 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vvi9g0853 177 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vvi9g0853 177 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 111 - -
Vvi9g0853 177 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vvi9g0853 177 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vvi9g0853 177 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0853 Vvi-Chr9 10792054 10792747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0853 1 177 AP2-EREBP Transcription Factor Family AT5G25190 62.222 1.78e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi9g0853 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0853 - - vvi:100255943 328.946