Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0852 ATGGCTGGAAAACAACAACAGCGATACCGGGGCGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTGAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACGAGCATATGATGAAGCAGCCAGGCTCATGTGTGGGCCAAGAGCTCGCACCAACTTCAGTTACAATCCCAACGACTCACAATCATCTTCGTCTAGGCTTCTCTCGGCGACTTTAACTGCTAAATTGCATAGATGCTACATGGCATCACTTCAAGCGGCCAAAGAGCCTTTAGCTACACACCTCCAACAACCTCACTACTCTCCAAATTTCGCCACAGACGGCAATGCCGGAAATAGCCGCCAAGTGGATGTCGGGTCACCAGCGAAGAGACGGCGACAAGTGCAGGGCAAAAGGGTTGGTGGGGAAGACGAGGAATTCAAGGTTCTTGAAGATGATCATATTGAGCAGATGATCGAGGAGTTGCTTCATTCTGGGTCTGTCGAGCTTAATTAG 528 0.5114 MAGKQQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFSYNPNDSQSSSSRLLSATLTAKLHRCYMASLQAAKEPLATHLQQPHYSPNFATDGNAGNSRQVDVGSPAKRRRQVQGKRVGGEDEEFKVLEDDHIEQMIEELLHSGSVELN* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0852 175 FunFam Ethylene-responsive transcription factor 2 7 66 - -
Vvi9g0852 175 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Vvi9g0852 175 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Vvi9g0852 175 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 123 - -
Vvi9g0852 175 MobiDBLite consensus disorder prediction 109 150 - -
Vvi9g0852 175 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Vvi9g0852 175 CDD AP2 7 64 IPR001471 GO:0003700|GO:0006355
Vvi9g0852 175 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Vvi9g0852 175 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Vvi9g0852 175 MobiDBLite consensus disorder prediction 109 127 - -
Vvi9g0852 175 Gene3D AP2/ERF domain 7 66 IPR036955 GO:0003700|GO:0006355
Vvi9g0852 175 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0852 Vvi-Chr9 10752837 10753506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0852 3 174 AP2-EREBP Transcription Factor Family AT5G25190 62.360 4.40e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi9g0852 AP2 6.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0852 - - vvi:100261023 331.257