Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0849 ATGCCAGAGGTTAGAGTAGTGCACCATCAAGATGTGAACAAGAGAATCCTTATAGCACTTGTTGTTGCTTCCACACTTCTTGGTGGAATTTTGCTATTTCTATCTTGTTTCTGGATCCAGAGGCAAAGAAATTTGAGGAATTCGGGTCGGAAAAGCCAACAAAACTTGGATGCTGCTAAAGGGCTTTCGTTAGGTCCAATCTTGGGTAAATTCAATTCTTTAAGGGCCAATGGTAAGAAGGATTCGGTAACTGTGATTGAATATCATCTGCTAGTGGCTGCAACCAACAATTTCAGTGAAAGTAATGTTTTGGGGGAGGGTGGCTCTGGTCGGGTTTACAAAGCTCGTTTCAATGAAAACTTCCTTGCAGCTGTGAAAAGACTAGATCGTGGTGGGCAAGATGGTGAAAGAGAATTTGAGAATGAGGTTGATTGGTTGAGTAAAATTCAGCATCAGAATATAGTTTCCCTTTTGGGCTGCTGCATTCATGGTGAAACTCGGTTTCTTGTTTATGAAATGATGCAGAATGGGTCTTTGGAAGCCCAATTACATGGGCCTTCTCATGGATCAACTTTAACTTGGCATCTCCGGATGAAAATTGCTGTTGATGTTGCAAGAGGATTAGAGCATCTTCATGAGCACTGCAACCCTCCTGTCATCCATAGAGATCTAAAATCATCCAATATACTTTTGGATTCCGACTTCAATGCCAAGCTTTCTGATTTTGGCCTCGCCATAACTTCTGGGACCCAGAACAAGAACAATCTAAAGCTTTCAGGGACGGTGGGTTATGTGGCCCCGGAATATCTCTTAGATGGAAAACTAACCGATAAAAGTGATGTTTATGCCTTTGGAGTTATCCTTTTGGAGCTTCTGATGGGAAGAAAACCAGTGGAAAAGATGGCATCAGCTGAATGCCAGTCAATTGTCACATGGGCAATGCCTCAGCTCACTGACAGATCAAAGCTTCCAAACATTGTGGATCCCATTGTCAGAGATACAATGGATATGAAGCACTTATATCAAGTTTCTGCTGTAGCAGTACTATGTGTTCAACCAGAGCCAAGTTACAGGCCATTGATAACAGATGTACTGCACTCCCTTATCCCTCTTTTACCCGTTGAGCTTGGAGGATCACTAAGAATTACAGAACCTTTGCCCCCCGTCTGCCCCGAGCCTTCTTCTCATTGA 1191 0.4299 MPEVRVVHHQDVNKRILIALVVASTLLGGILLFLSCFWIQRQRNLRNSGRKSQQNLDAAKGLSLGPILGKFNSLRANGKKDSVTVIEYHLLVAATNNFSESNVLGEGGSGRVYKARFNENFLAAVKRLDRGGQDGEREFENEVDWLSKIQHQNIVSLLGCCIHGETRFLVYEMMQNGSLEAQLHGPSHGSTLTWHLRMKIAVDVARGLEHLHEHCNPPVIHRDLKSSNILLDSDFNAKLSDFGLAITSGTQNKNNLKLSGTVGYVAPEYLLDGKLTDKSDVYAFGVILLELLMGRKPVEKMASAECQSIVTWAMPQLTDRSKLPNIVDPIVRDTMDMKHLYQVSAVAVLCVQPEPSYRPLITDVLHSLIPLLPVELGGSLRITEPLPPVCPEPSSH* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0849 396 Gene3D Transferase(Phosphotransferase) domain 1 174 373 - -
Vvi9g0849 396 Pfam Protein tyrosine and serine/threonine kinase 101 329 IPR001245 GO:0004672|GO:0006468
Vvi9g0849 396 FunFam Protein kinase superfamily protein 65 173 - -
Vvi9g0849 396 FunFam probable receptor-like protein kinase At1g80640 174 373 - -
Vvi9g0849 396 PANTHER OS01G0750732 PROTEIN 7 369 - -
Vvi9g0849 396 Gene3D Phosphorylase Kinase; domain 1 69 173 - -
Vvi9g0849 396 SUPERFAMILY Protein kinase-like (PK-like) 81 368 IPR011009 -
Vvi9g0849 396 ProSiteProfiles Protein kinase domain profile. 98 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0849 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vvi9g0849 396 SMART serkin_6 98 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0849 396 CDD STKc_IRAK 104 371 - -
Vvi9g0849 396 ProSitePatterns Protein kinases ATP-binding region signature. 104 126 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0849 Vvi-Chr9 10684664 10687655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0849 2 314 Receptor kinase-like Gene Family AT1G80640 57.962 2.46e-121 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vvi9g0849 PK_Tyr_Ser-Thr 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0849 - - vvi:100252673 794.267