Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0847 ATGGAGATACCAAGATCAGAGCCATGTCTCTCTGAAACTTCTAGCATCATTTCAGTTTCAGAAGCTGCACCATCCTTGAATACCTCAATGGATAGCCCAAAAGAGGGGAAGCAGCAAGAAGGACAAGATCGAAACCAGGAAGAGCTCACAAATCCTGATCTTGTACTGGATCTAAGCCTCTCTAGCAGAGATTTGGAACAAGGGTCGAGGCCAGAACTTAATCTCATCAACTCCTTCGAGATGGGCTCATCTCAAAATCATTCAGAAATTCCTCAAGGAAATGAAGGTGAGCCGAGAGTGTTCTCGTGCAACTATTGCCAGAGAAAGTTCTACAGCTCACAGGCACTTGGAGGACACCAAAATGCACACAAACGAGAGAGGACCCTTGCAAAACGTGGGCAGCGGATTGGTGCAGCTTCAGTAGCTTTTGGGCATCCCTTACCCAACCCTTATCGATTCTCTAGCATGGCTTCTCTACCTCTGCATGGATCTTTCAATAGGTCTCTTGGCATTCAGGCTCATTCTCTGATCCATAAGCCATCCTCCCTATCATCCACTCTCTACGGACATCAAGGATGGTCAAGGCTGCCTATTGATCAACAACCCGCCATTGGGCGACTTGCACCAGAGAATTATCATGTTGGATCATCATCATCCAGTGGTGGCGCCGCAAGGTTTGAGACTGTTCGGAAGTTTTCTCGGCCGGCAAGTGAGGGAATTGGAGGCTACTGGTGGAACAATAGTAACAATTTGAAGATGAATCAAGATGAGTTGCAGAAGCTTGACTTGTCCCTCAAGCTCTGA 804 0.4726 MEIPRSEPCLSETSSIISVSEAAPSLNTSMDSPKEGKQQEGQDRNQEELTNPDLVLDLSLSSRDLEQGSRPELNLINSFEMGSSQNHSEIPQGNEGEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGAASVAFGHPLPNPYRFSSMASLPLHGSFNRSLGIQAHSLIHKPSSLSSTLYGHQGWSRLPIDQQPAIGRLAPENYHVGSSSSSGGAARFETVRKFSRPASEGIGGYWWNNSNNLKMNQDELQKLDLSLKL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0847 267 MobiDBLite consensus disorder prediction 1 53 - -
Vvi9g0847 267 Gene3D Classic Zinc Finger 79 141 - -
Vvi9g0847 267 MobiDBLite consensus disorder prediction 8 35 - -
Vvi9g0847 267 FunFam Zinc finger protein 2 78 147 - -
Vvi9g0847 267 SUPERFAMILY beta-beta-alpha zinc fingers 99 128 IPR036236 -
Vvi9g0847 267 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 267 IPR044246 GO:0009788
Vvi9g0847 267 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Vvi9g0847 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0847 Vvi-Chr9 10638815 10639618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0847 53 267 C2H2 Transcription Factor Family AT1G80730 46.491 1.81e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi9g0847 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0847 - - vvi:100262945 517.694