Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0829 ATGGACCGAGAAGCTTTGCGAGCTGTTACGTTTTTTCCTAAACCTGAATCCTTCGAAGTTCATGAAACCTTACGCTACTTGAGCGAAACCGCACCGTTTTACGGATCCCTTCTTGGAGCCCACTTCTCACTTTCTTCTGTTTCTGTCCCGGAGCTCGTCAACCTGCCCAGCAATGGTGCTGTTTTGGCCGATTTATCGGGGAATTTGGGGGATGGTACCCAGAAGGAAGCCGAAATTCCTCCGGTTCTTGACGGAATAGCTGCGGTTGTTGGCCAACACGTTCTCTTTGGAGGGAAAAAGAGTGGGAGCAGCTGTGATGGTGGCGGGATTTCGGGGTTCGTGCCGGTTTCGCAGCGCTTCGGTGCCGAAAAGACAGTGGTGGATAAGAAAAATATCGGTGACGTTTCCGTGCAGAAGAGCTATAGAGGAGTGAGAAAGCGGCCGTGGGGGAGGTGGTCGGCGGAGATTCGCGACAGAATCGGGCGCTGCAGGCACTGGCTGGGCACGTTCGACACGGCGGAGGAGGCAGCGCGTGCATACGACGCGGCGGCGAGGCGGCTCAGAGGGTCGAAAGCTCGGACCAACTTCGAGATCCCCTCGGTGTTGCCTCTCTCATCCCCATCTTCTTCGTCGTCATCATCTGAAATGAAGAGGAATATGAGTAGTAAGCCTAAGGCGCAGAATAGAAGAAAGTGCTCAGTAGTCACTTCTGTTGCTCATCTCTTCAGTTCTAGTTCTATCCCTTCCACCACTGAAGTTAAGGGAAAAGTAAATGTGGAGCTAGATTTGAAGCTGGGTGTCAATTTCAGTAACAGAAATGCTGCATCAGTGCCTCTTTCACCTTCTACATGA 852 0.5223 MDREALRAVTFFPKPESFEVHETLRYLSETAPFYGSLLGAHFSLSSVSVPELVNLPSNGAVLADLSGNLGDGTQKEAEIPPVLDGIAAVVGQHVLFGGKKSGSSCDGGGISGFVPVSQRFGAEKTVVDKKNIGDVSVQKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLSSPSSSSSSSEMKRNMSSKPKAQNRRKCSVVTSVAHLFSSSSIPSTTEVKGKVNVELDLKLGVNFSNRNAASVPLSPST* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0829 283 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700|GO:0006355
Vvi9g0829 283 SMART rav1_2 140 203 IPR001471 GO:0003700|GO:0006355
Vvi9g0829 283 SUPERFAMILY DNA-binding domain 140 197 IPR016177 GO:0003677
Vvi9g0829 283 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Vvi9g0829 283 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Vvi9g0829 283 MobiDBLite consensus disorder prediction 200 231 - -
Vvi9g0829 283 Gene3D AP2/ERF domain 139 198 IPR036955 GO:0003700|GO:0006355
Vvi9g0829 283 FunFam Ethylene-responsive transcription factor 2 139 198 - -
Vvi9g0829 283 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Vvi9g0829 283 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 122 227 - -
Vvi9g0829 283 Pfam AP2 domain 140 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0829 Vvi-Chr9 10245402 10246253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0829 84 262 AP2-EREBP Transcription Factor Family AT1G80580 48.619 1.85e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi9g0829 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0829 - - vvi:100250926 506.523