Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0810 ATGCTCATGGAAAGGTTTAGCTTTCTCTACCTAGTTGGAGCTCTATCAGTTCAGTCCTGCTTGCTTCTTTTGGCTGCGTCCCCCTCCAACTTCACTGATCAATCCGCTCTCCTCGCCTTCAAATCAGATATCATCGATCCAACCCACTCTATCTTGGGTGGTAATTGGACCCAAGAAACAAGCTTTTGTAATTGGGTTGGGGTCTCTTGTAGTCGGAGAAGACAGAGAGTCACAGCTTTGCGCCTTCAGAAAAGGGGTCTTAAGGGCACTCTTTCTCCCTATCTTGGCAATCTCTCCTTTATCGTGTTGCTTGACCTCAGTAATAATAGCTTTGGCGGCCATCTGCCATATGAGCTTGGTCATTTATATCGTTTGAGAATACTGATATTACAAAATAACCAGCTAGAAGGAAAGATCCCGCCCAGTATATCCCATTGCCGGAGGCTTGAATTCATCTCTCTTGCATCAAACTGGCTGAGTGGTGGCATACCAGAGGAGTTAGGCATCTTGCCCAAGCTAGATTCCTTGCTTCTGGGAGGAAACAATCTCAGGGGTACAATCCCATCATCCCTAGGCAACATCTCAACTTTAGAGTTGTTGGGTTTGCGTGAGACTGGCCTCACAGGTTCAATTCCTTCTCTCATCTTTAACATATCTTCTCTACTGTCAATTATTCTTACCGGTAATAGCATCTCGGGTAGTCTTTCTGTTGATATTTGCCAGCACTCCCCTAATATTGAAGAATTGCTTTTCACTGACAACCAACTTAGCGGCCAACTACCATCAGGAATTCACCGTTGTAGGGAGCTTCTCTTTGCATCTCTATCATACAATAGGTTTGATGGACAAATACCAGAAGAAATCGGGAGTTTACGAAATCTTGAGGAGCTGTATCTTGGTGGTAACCATTTGACAGGACCCATTCCATCCTCCATTGGCAACATTTCAAGCTTACAGATTCTATTCTTAGAGGACAACAAAATCCAAGGTAGCATACCGAGTACCTTGGGAAATCTTTTGAATCTAAGTTATCTGGTCCTGGAATTAAATGAGCTCACTGGGGCAATACCACAAGAAATCTTCAACATCTCCTCTCTACAAATTCTGTCCGTTGTAAAAAACAATCTTTCTGGAAATCTTCCATCAACGACTGGGCTTGGGCTTCCTAATCTTATGGTTCTCTTTCTAGCAGGGAATGGCCTTAGTGGAAAAATTCCTCCATCTCTTTCGAACTATTCTCAGCTCACTAAGATTGATATTGGCAACAATTTATTCACGGGACCAATACCCCCAAGCCTAGGCAACTTAAAATTCCTCCAAACCCTTTCTCTTGGAGAAAATCAGCTAAAAGTAGAACCGGGAAGGCCTGAACTTAGTTTCATTACTGCTTTAACAAACTGCAGACTTTTAGAAGAGATAACTATGCCGAACAATCCCCTGGGTGGCATCATACCAAATTCGATTGGGAATTTGTCAAACCACGTTAGAAATATTGTTGCATTTGGATGCCAACTAAAGGGTCATATTCCTTCAGGGATTGGTTCTTTGAAAAACTTGGGTACACTTGAATTGGGCGACAACAATCTGAATGGAAACATCCCATCAACAATTGGAAGATTGGAGAATCTACAAAGGATGAATATTTTTAATAACGAGCTTGAAGGGCCCATTCCAGAAGAGCTTTGTGGTTTAAGGGACCTGGGGGAATTATCACTCTATAATAATAAACTGTCTGGGTCAATCCCACATTGCATTGGAAATCTTAGTAGATTACAGAAGCTATTCCTGAGTTCCAATAGTTTGACCTCCTCAATACCAACAGGTCTATGGAGCCTTGGAAACCTCTTGTTCTTGAATTTATCATTCAATTCTCTTGGCGGATCCCTACCTTCAGACATGGGAACTCTGACTGTCATAGAGGATATAGATTTATCTTGGAACAAACTCATTGGAAATATCCCAGGCATCCTTGGGACCTTTGAAAGCCTATATTCCCTCAACTTGTCGAGAAACTCTTTCCAAGAAGCAATTCCAGAAACACTTGGCAAGTTGAGAGCGTTGGAATTCATGGATCTTTCACAAAACAATCTATCTGGCACAATACCCAAGTCTTTTGAGGCACTTTCACATCTCAAGTATTTGAATTTGTCTTTCAACAATCTATCAGGAGAGATCCCGAATGGGGGCCCTTTTGTGAACTTCACAGCTCAATCATTTTTGGAGAACAAAGCACTTTGTGGGCGCTCAATCTTACTAGTATCACCTTGTCCAACTAATAGAACACAGGAATCAAAGACTAAGCAAGTTCTTCTCAAATACGTTCTTCCAGGCATTGCAGCAGTTGTAGTATTTGGAGCTCTCTATTATATGCTGAAGAATTATAGAAAAGGTAAACTACGAATTCAAAATTTGGTTGATTTGTTACCTTCAATTCAGCACAGGATGATTTCATATCTGGAGCTTCAACGTGCCACAAATAGCTTCTGTGAAACCAACTTGCTTGGAGTGGGAAGTTTTGGTTCAGTATACAAAGGAATTCTATCTGATGGTACAACTGTTGCAGTTAAAGTCCTGAATTTGCGACTCGAAGGTGCTTTTAAAAGTTTTGATGCAGAATGTAAGGTACTAGCAAGGATTCGACATAGGAATCTCATCAAAGTCATAAGTTCATGTTCAAACCTTGATGTAAGAGCTTTGGTTTTGCAATACATGTCCAACGGCAGTCTTGAGAAGTGGTTATATTCTCATAACTACTGCTTGAATCTCTTTCAAAGAGTAAGCATCATGTTGGATGTTGCCTTAGCTTTGGAATATCTCCATCATAGTCAATCAGAGCCTGTGGTTCACTGTGATTTGAAGCCCAGCAATGTCCTCCTAGATGATGACATGGTTGCACATGTGGGCGACTTTGGTCTTGCAAAGATTTTAGTAGAAAACAAGGTTGTAACACAGACAAAGACCCTGGGTACTCTCGGCTATATTGCACCAGAGTATGGTTCTGAAGGAAGAGTATCTACAAAAGGTGATGTTTACAGCTACGGGATTATGCTGTTGGAGATCTTCACAAGAAAGAAACCGACTGATGAAATGTTCTCTGAAGAGCTGAGTTTGAGGCAATGGGTAAATGCATCACTTCCTGAAAACGTAATGGAAGTTGTTGATGGTGGCTTATTGAGTATAGAAGATGGTGAAGCTGGAGGAGATGTGATGGCCACACAAAGTAATCTTCTTCTTGCTATTATGGAATTAGGCTTAGAGTGTTCGAGGGACTTGCCTGAAGAGAGGAAAGGCATAAAAGACGTGGTCGTCAAGCTGAACAAGATCAAACTGCAATTTCTTCGCAGGACGCGTGCTTGA 3357 0.4164 MLMERFSFLYLVGALSVQSCLLLLAASPSNFTDQSALLAFKSDIIDPTHSILGGNWTQETSFCNWVGVSCSRRRQRVTALRLQKRGLKGTLSPYLGNLSFIVLLDLSNNSFGGHLPYELGHLYRLRILILQNNQLEGKIPPSISHCRRLEFISLASNWLSGGIPEELGILPKLDSLLLGGNNLRGTIPSSLGNISTLELLGLRETGLTGSIPSLIFNISSLLSIILTGNSISGSLSVDICQHSPNIEELLFTDNQLSGQLPSGIHRCRELLFASLSYNRFDGQIPEEIGSLRNLEELYLGGNHLTGPIPSSIGNISSLQILFLEDNKIQGSIPSTLGNLLNLSYLVLELNELTGAIPQEIFNISSLQILSVVKNNLSGNLPSTTGLGLPNLMVLFLAGNGLSGKIPPSLSNYSQLTKIDIGNNLFTGPIPPSLGNLKFLQTLSLGENQLKVEPGRPELSFITALTNCRLLEEITMPNNPLGGIIPNSIGNLSNHVRNIVAFGCQLKGHIPSGIGSLKNLGTLELGDNNLNGNIPSTIGRLENLQRMNIFNNELEGPIPEELCGLRDLGELSLYNNKLSGSIPHCIGNLSRLQKLFLSSNSLTSSIPTGLWSLGNLLFLNLSFNSLGGSLPSDMGTLTVIEDIDLSWNKLIGNIPGILGTFESLYSLNLSRNSFQEAIPETLGKLRALEFMDLSQNNLSGTIPKSFEALSHLKYLNLSFNNLSGEIPNGGPFVNFTAQSFLENKALCGRSILLVSPCPTNRTQESKTKQVLLKYVLPGIAAVVVFGALYYMLKNYRKGKLRIQNLVDLLPSIQHRMISYLELQRATNSFCETNLLGVGSFGSVYKGILSDGTTVAVKVLNLRLEGAFKSFDAECKVLARIRHRNLIKVISSCSNLDVRALVLQYMSNGSLEKWLYSHNYCLNLFQRVSIMLDVALALEYLHHSQSEPVVHCDLKPSNVLLDDDMVAHVGDFGLAKILVENKVVTQTKTLGTLGYIAPEYGSEGRVSTKGDVYSYGIMLLEIFTRKKPTDEMFSEELSLRQWVNASLPENVMEVVDGGLLSIEDGEAGGDVMATQSNLLLAIMELGLECSRDLPEERKGIKDVVVKLNKIKLQFLRRTRA* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0810 1118 Pfam Leucine rich repeat 662 721 IPR001611 GO:0005515
Vvi9g0810 1118 CDD STKc_IRAK 834 1108 - -
Vvi9g0810 1118 Gene3D Ribonuclease Inhibitor 389 456 IPR032675 -
Vvi9g0810 1118 Gene3D Phosphorylase Kinase; domain 1 798 903 - -
Vvi9g0810 1118 Pfam Protein kinase domain 831 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0810 1118 SMART LRR_typ_2 339 363 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 612 636 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 588 611 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 291 315 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 388 412 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 684 707 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 122 146 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 516 540 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 660 683 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 708 732 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 564 587 IPR003591 -
Vvi9g0810 1118 SMART LRR_typ_2 170 194 IPR003591 -
Vvi9g0810 1118 SUPERFAMILY Protein kinase-like (PK-like) 806 1104 IPR011009 -
Vvi9g0810 1118 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 463 760 - -
Vvi9g0810 1118 FunFam Leucine-rich receptor-like protein kinase family protein 260 357 - -
Vvi9g0810 1118 Gene3D Ribonuclease Inhibitor 197 388 IPR032675 -
Vvi9g0810 1118 SMART serkin_6 828 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0810 1118 SUPERFAMILY RNI-like 163 495 - -
Vvi9g0810 1118 SUPERFAMILY L domain-like 85 188 - -
Vvi9g0810 1118 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 388 1107 - -
Vvi9g0810 1118 Gene3D Ribonuclease Inhibitor 30 190 IPR032675 -
Vvi9g0810 1118 Gene3D Transferase(Phosphotransferase) domain 1 904 1115 - -
Vvi9g0810 1118 SUPERFAMILY RNI-like 387 727 - -
Vvi9g0810 1118 FunFam Leucine-rich repeat receptor protein kinase EMS1 358 454 - -
Vvi9g0810 1118 FunFam Serine-threonine protein kinase plant-type 809 903 - -
Vvi9g0810 1118 ProSiteProfiles Protein kinase domain profile. 828 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0810 1118 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi9g0810 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 947 959 IPR008271 GO:0004672|GO:0006468
Vvi9g0810 1118 Gene3D Ribonuclease Inhibitor 457 765 IPR032675 -
Vvi9g0810 1118 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vvi9g0810 1118 SMART LRR_sd22_2 684 710 - -
Vvi9g0810 1118 SMART LRR_sd22_2 388 414 - -
Vvi9g0810 1118 SMART LRR_sd22_2 564 590 - -
Vvi9g0810 1118 SMART LRR_sd22_2 516 545 - -
Vvi9g0810 1118 SMART LRR_sd22_2 636 655 - -
Vvi9g0810 1118 SMART LRR_sd22_2 291 317 - -
Vvi9g0810 1118 ProSitePatterns Protein kinases ATP-binding region signature. 834 856 IPR017441 GO:0005524
Vvi9g0810 1118 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 904 1118 - -
Vvi9g0810 1118 Pfam Leucine Rich Repeat 293 314 IPR001611 GO:0005515
Vvi9g0810 1118 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
Vvi9g0810 1118 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0810 Vvi-Chr9 9824665 9828107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0810 504 729 Receptor kinase-like Gene Family AT3G47570 36.842 1.22e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi9g0810 Pkinase 4.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0810 - - vvi:100268109 2102.02