Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0800 ATGGCTAGGGCTCTTGATCATCTGTCTCTCTTTTCTTCTGTACTCTCCTTTTCATTTTTACTAGCTTTCCTTTGCTGTTTTGAGACTTGCCATAGCTTCAAACCCAAGTATTTTAACTTGTCGAGGGCAGGAACTCACTGGGCATCTGCAGGTGCCACTTGGTATGGCAGTCCTGAAGGAGCTGGAAGTGATGGAGGATCCTGTGGATATGGAAATGCAGTGTCACAGCCTCCTTTCTCTTCAATGATTACTGGAATAGGCCCATCTCTCTACAAATCAGGCAAGGAATGTGGAGCCTGTTACCAGGTGAAATGCACCAAACGTATGCATCCATCCTGTTCTGGCCGTCCAGTGAGAGTAGTCATAACAGACTTCTGCCCCGGAGGTCCCTGTGCCTCCCAATCTGCACACTTCGACCTCAGTGGCACTGCATTTGGCGCCATGGCAATCCCCGGTCAAGAAGAAAAACTTCGCAATGTCGGAGTCTTGGAAATTCGATACGCACGAGTTGCTTGTGATTATTCAGGAAAAACCATAGCATTCCATGTAGACCTAGGCGCAAACCCTAACTCCTTCTCTGTGCTGGTTGAGTTTGAAGAGGGGGATGGAGACCTTGCTGGTGTTGCCCTAAAGGAGACCTTAAAGGGTTCGGGAAAATGGCGAGCCATGCAACAATCATGGGGAGCTGTTTGGAAGCTGGATGCTGGCTATGAATTAAAACCTCCTTTCTCAATTCAGTTGACATCACAGTACTCAGGACAAACCCTAGTAGCAAAAAATGTAATCCCAGATGGGTGGAAGCCTGGTTCGACATATAGATCCTTGGTCAACTACCTTTGA 840 0.4762 MARALDHLSLFSSVLSFSFLLAFLCCFETCHSFKPKYFNLSRAGTHWASAGATWYGSPEGAGSDGGSCGYGNAVSQPPFSSMITGIGPSLYKSGKECGACYQVKCTKRMHPSCSGRPVRVVITDFCPGGPCASQSAHFDLSGTAFGAMAIPGQEEKLRNVGVLEIRYARVACDYSGKTIAFHVDLGANPNSFSVLVEFEEGDGDLAGVALKETLKGSGKWRAMQQSWGAVWKLDAGYELKPPFSIQLTSQYSGQTLVAKNVIPDGWKPGSTYRSLVNYL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0800 279 SMART dpbb_1 83 167 IPR007112 -
Vvi9g0800 279 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Vvi9g0800 279 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Vvi9g0800 279 PRINTS Major pollen allergen Lol pI signature 107 117 IPR005795 GO:0005576|GO:0019953
Vvi9g0800 279 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Vvi9g0800 279 CDD DPBB_EXPB_N 47 172 - -
Vvi9g0800 279 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Vvi9g0800 279 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Vvi9g0800 279 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Vvi9g0800 279 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Vvi9g0800 279 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Vvi9g0800 279 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Vvi9g0800 279 SUPERFAMILY Barwin-like endoglucanases 43 176 IPR036908 -
Vvi9g0800 279 Gene3D - 33 173 IPR036908 -
Vvi9g0800 279 Pfam Expansin C-terminal domain 179 263 IPR007117 -
Vvi9g0800 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 274 IPR007117 -
Vvi9g0800 279 Pfam Lytic transglycolase 88 167 IPR009009 -
Vvi9g0800 279 PANTHER EXPANSIN-B3 24 277 - -
Vvi9g0800 279 Gene3D - 174 278 IPR036749 -
Vvi9g0800 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 177 IPR007112 -
Vvi9g0800 279 SUPERFAMILY PHL pollen allergen 177 274 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0800 Vvi-Chr9 9571601 9574374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0800 31 278 Expansin Gene Family AT1G65680 59.761 3.84e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0800 - - vvi:100264455 552.747