Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0796 ATGAAAACAGTGGATGCAAGGCCTAGAGTGCCTGGAATGCAAGCAATGACACTGAGTATAAACGGTGATAAAGCCATGTTCTACAATGTCAGGCTCTTGGGGGCACAGGACCCCCTCATGGATTTGTTTGGAACACACTACTTTAACCAGTGTTACATCCAAGGAAGCATTGACTTTATCTTTGGTGGGGCAAGATCAATCTATCAGGTAAAGGGGTTGATTTTGATCATTTTGATAATAGAAATTACTATTATTGCTTCAATCCAAATGTTGGGTATTTCTGTATGA 288 0.4028 MKTVDARPRVPGMQAMTLSINGDKAMFYNVRLLGAQDPLMDLFGTHYFNQCYIQGSIDFIFGGARSIYQVKGLILIILIIEITIIASIQMLGISV* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0796 95 Pfam Pectinesterase 13 70 IPR000070 GO:0030599|GO:0042545
Vvi9g0796 95 ProSitePatterns Pectinesterase signature 2. 53 62 IPR033131 -
Vvi9g0796 95 Gene3D - 2 74 IPR012334 -
Vvi9g0796 95 SUPERFAMILY Pectin lyase-like 10 74 IPR011050 -
Vvi9g0796 95 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0796 Vvi-Chr9 9488898 9489185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0796 3 69 Carbohydrate Esterase AT5G55590 61.194 4.06e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0796 K01051 - vvi:100242915 122.864