Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0789 ATGAAAATATTTTATTCTAGTCATGTAAGGTTGAGACTTTGGAAATGTGAGTATGTTAAAACTACATTGCTCCAAACTGAAGGTTGTGGTTGGGGTCTCCTCACTAATGAGAATATTAAGGTAGAAGAATTGGTTATTGAGCACTATGGAGAGGTGATTTCACGGACCAAAGCAAGAGGAAGGTCCCAAGTTTGTGTGTCTCAATGCATGAAGGATGCATATATAATTTTTCTTAATGCCAAGTATTGCGATGATGCCACTAAAAAGGGGAACCTAGGTAGGTTTAATCTAGCTAGGTTTATAAACCATTCATGGTAA 318 0.3711 MKIFYSSHVRLRLWKCEYVKTTLLQTEGCGWGLLTNENIKVEELVIEHYGEVISRTKARGRSQVCVSQCMKDAYIIFLNAKYCDDATKKGNLGRFNLARFINHSW* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0789 105 SUPERFAMILY SET domain 12 104 IPR046341 -
Vvi9g0789 105 Pfam SET domain 30 104 IPR001214 GO:0005515
Vvi9g0789 105 Gene3D SET domain 5 105 IPR046341 -
Vvi9g0789 105 PANTHER SET DOMAIN PROTEINS 13 104 - -
Vvi9g0789 105 ProSiteProfiles SET domain profile. 14 105 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0789 Vvi-Chr9 9385773 9386782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0789 20 104 C2H2 Transcription Factor Family AT2G23740 33.333 4.18e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi9g0789 SET 9.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0789 - - vvi:100853610 114.005