Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0703 ATGGAGGAAGGTTCTGAAAACAGTGAGCAACTGCTTGATAATGAGGGCAATGACCTTGAGAATGAGTGTGAACAAGTGCTTGAGAATGAAGGAAATGATCTTGACAATGATTGTGAGCAAGTATTTGAGATTGAAGGCAATGACCATGAAAATGTCACAGATTTTGATACAAGAATAGTTGATGGAGAGAATGGCATGTCTCAAGGGAAGAATTATCTCCCACCAGTTGTTGGGATGGAGTTCGAGTCATATGATGATGCATATAACTATTATAATTGCTATGCTAAAGAACTGGGATTTGCTATCAGGGTGAAATCCTCATGGACAAAACGTAATAGCAAAGAGAAGCGTGGTGCAGTACTCTGTTGCAATTGTGAGGGTTTTAAAACAATTAAAGAAGCAAATAGTCGAAGGAAGGAAACGAGAACTGGTTGTCTGGCAATGATAAGGTTGAGGTTAGTGGAATCAAACAGGTGGAGGGTGGACGAAGTGAAGCTAGAACACAACCATTTATTTGATCCCGAAAGGGCTCAAAATTCCAAGTCACATAAGAAGATGGATGCTGGGGCCAAAAGGAAGGTGGAGCCGACACTTGATGTAGAAACTTCTTTGAAAGAATTTTTAGACATGTACGAGTTTATTCTACAAAAAGGGCATCAAAAGGAAGCTGTTGATGATTTTGAGTCCAGAGATTCAACCCCCACATTGAAAACAAGATGCTTTTATGAGTTACAGCTCTCTAATGTATACACAAAAGAGATATTTGAGAAATTCCAAGGCGAGATTGAGATGATGTCTTCTTGTATTAGCATAACACAGCTCCATGTTAATGGGCCCATAGTCACATACATAGTCAAAGAACGTGAAGGTGATGTAAATATGAGGGAAGTTAGAAACTTTGAAGTTATGTATGATAAAGCAGGAGCTGAGGTTCGATGCATTTGCAGTTGTTTTAACTTCAAAGGTTATCTATGCCGACATGCAATGTGTGTACTCAACTACAATGGTCTGGAAGAAATCCCACTTCAATATATCCTGTCACGATGGAGGAAAGATTTCAAACGTCTATACATACCAGATCTTGGCTCCAACAATGTTGATATCACGAACCCAGTTCAGTGGTTTGATCACCTGTACAGACGAGCATTACAAGTTGTCGAGGAAGGTATGACATCTCAAGATCACTACATGGTCGCTTGGCAAGCATTTAAAGAATCTTTGAATAAGGTTCGACTTGCAGCAGACAAGCATGTTTTGCCCTACAGTCATTGTAGGCATTACAGAACAGAGGAATTTCTTACTGGGACCTGCAATTCCAGAATCATTTCAGTGAAGCACAGCCCATGCGTGCCCAGAAACTGCCTTTTGCTTTTGTCCTTACAGCCTGTTCATCTTCGTTGA 1401 0.4033 MEEGSENSEQLLDNEGNDLENECEQVLENEGNDLDNDCEQVFEIEGNDHENVTDFDTRIVDGENGMSQGKNYLPPVVGMEFESYDDAYNYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEANSRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLFDPERAQNSKSHKKMDAGAKRKVEPTLDVETSLKEFLDMYEFILQKGHQKEAVDDFESRDSTPTLKTRCFYELQLSNVYTKEIFEKFQGEIEMMSSCISITQLHVNGPIVTYIVKEREGDVNMREVRNFEVMYDKAGAEVRCICSCFNFKGYLCRHAMCVLNYNGLEEIPLQYILSRWRKDFKRLYIPDLGSNNVDITNPVQWFDHLYRRALQVVEEGMTSQDHYMVAWQAFKESLNKVRLAADKHVLPYSHCRHYRTEEFLTGTCNSRIISVKHSPCVPRNCLLLLSLQPVHLR* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0703 466 SMART 26again6 311 338 IPR006564 GO:0008270
Vvi9g0703 466 Pfam FAR1 DNA-binding domain 89 172 IPR004330 -
Vvi9g0703 466 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 200 411 IPR031052 GO:0006355
Vvi9g0703 466 ProSiteProfiles Zinc finger SWIM-type profile. 300 336 IPR007527 GO:0008270
Vvi9g0703 466 Coils Coil 9 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0703 Vvi-Chr9 7462580 7464965 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi9g0703 FAR1 3.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0703 K17604 - vvi:100249256 451.055