Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0702 ATGGAAGAAATCTCTCTCAGCAGTGAGCAAGTGCCCAGTGGTGAAGGCAATGAAACTGAGAAAGAAAGAGATGGTGAGAAAACAGAATTAGTTGTTCAAAATGGTTTGACTCAAGGAAGGAAAGAATTTGTCGCACCTGCTGTGGGTATGGAATTTGAATCATATGATGATGCTTACAACTATTATAATTGCTATGCCAAGGAGGTGGGTTTTCGTGTTAGAGTGAAAAATTCATGGTTCAAGAGAAATAGTAGAGAAAAATATGGTGCAGTGCTTTGTTGCAGTAGCCAGGGTTTCAAAAGAATTAAAGATGTCAATCGCTTACGGAAGGAAACAAGAACTGGTTGTCCTGCAATGATAAGGATGAGGTTAGTTGACTCCAAAAGGTGGAGAGTTCTCGAAGTTACCCTTGAGCACAACCACTTATTAGGTGCAAAAATTTACAAGTCAATGAAGAAGATGGGCAGTGGAACCAAAAGGAAGTTGCAGTCAAATTCGGATGCAGAAGTGCGGACAATCAAGTTGTACCGAGCCCTTGTGATTGATGCAGGAGGTAATTCCAGCTTAAATTCAAATGTGAAAGAAATCAGAAAATTTTCTGATCATCCCAATCAGTTGAACCTTAAAAAAGGTGATACACAAGCCATTTATAATTATCTCTGCCGTATGCAGTTGACGAATCCAAACTTCTTTTACTTGATGGATCTAAATGATGAGGGGTGTTTGAGGAATGTGTTCTGGATTGATGCTAGGTCTCGTGCTGCATGTGGTTACTTTAGTGATGTGATTTTTTTTGACAACACATATTTGTCAAACAAATATGAGATCCCACTTGTGGCCCTTGTTGGAGTAAATCACCATGGCCAGTCTGTGTTGCTGGGATGTGGTCTACTTGCGGGTGAGACATCAGAATCTTATGTTTGGCTGTTCAAAGCATGGGTTACATGTATGTCTGGAAGGACTCCACAGACTATTATTACAGACAGATGCAAGGCTTTGCAGAATGCAATTGCAGAGGTGTTTCCAAGATCGCATCATCGTTTTGGTTTGTCACATATCATGAAAAAGGTTCCAGAGAAGTTGGGTGGACTGCGTAACTATGATGCAATTAGAAAAGCACTAATTAAAGCAGTTTATGAAAGTTTAAAAGTGATTGAATTTGAATCAGCATGGGGATTTTTGATTCAGCGCTTTGCAGTTAGTGATCATGAGTGGCTTCGGTCTTTGTTTGAAGATCGAGCTAGATGGGCTCCAGTTTATTTAAAAGACACGCATTTTGCTGGAATGTCTTCTTCACAGCCAGGTGAGACCCTGAATCCCTTTTTTGATAGATATGTGCACAAACAGACTCCTTTGAAAGAATTTCTTGATAAATATGAATTAGCCCTACAAAAGAAGCACAAGGAAGAAGCACTGGCTGATATTGAGTCGAGAAACTCAGGCCCCACCTTGAAAACTCGATGCTTTTTTGAGTTGCAACTCTCCAAGGTGTACACAAGAGAAATATTTAAAAAGTTCCAATTCGAGGTGGAGGAGATGTATTCTTGTTTTAGTACAACGCAGCTGCATGTTGATGGACCGATAATAATATTTCTGGTCAAGGAGCGCGTTCTAGGTGAGGGGAATAGGAGGGAGATCAGGGATTTTGAAGTTCTGTACAATAGAGCAGCAGCAGAAGTTCGTTGCATTTGCAGTTGCTTTAATTTTTATGGGTATTTGTGTCGGCATGCATTGTGTGTACTTAATTTCAATGGGGTGGAGGAGATACCTTCCAAGTACATTTTGTCACGATGGAAAAAGGATTACAAGCGCTTATATATTCCTGATCATGTTTCCAATAATGTTGATGGCACTGACCGAGTGCAATGGTTTAATCAGTTATATAGAAGTGCCTTGCAAGTTGTGGAGGAAGGGGCAATTTCGCTAGACCATTACAAGATTGCATTGCAAGCATTTGATGAGTCGTTGAATAGAGTTCACAATGTTGAAGAAAAGCCTGAACAACTTAAAATATGA 2016 0.4003 MEEISLSSEQVPSGEGNETEKERDGEKTELVVQNGLTQGRKEFVAPAVGMEFESYDDAYNYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNRLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHLLGAKIYKSMKKMGSGTKRKLQSNSDAEVRTIKLYRALVIDAGGNSSLNSNVKEIRKFSDHPNQLNLKKGDTQAIYNYLCRMQLTNPNFFYLMDLNDEGCLRNVFWIDARSRAACGYFSDVIFFDNTYLSNKYEIPLVALVGVNHHGQSVLLGCGLLAGETSESYVWLFKAWVTCMSGRTPQTIITDRCKALQNAIAEVFPRSHHRFGLSHIMKKVPEKLGGLRNYDAIRKALIKAVYESLKVIEFESAWGFLIQRFAVSDHEWLRSLFEDRARWAPVYLKDTHFAGMSSSQPGETLNPFFDRYVHKQTPLKEFLDKYELALQKKHKEEALADIESRNSGPTLKTRCFFELQLSKVYTREIFKKFQFEVEEMYSCFSTTQLHVDGPIIIFLVKERVLGEGNRREIRDFEVLYNRAAAEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPSKYILSRWKKDYKRLYIPDHVSNNVDGTDRVQWFNQLYRSALQVVEEGAISLDHYKIALQAFDESLNRVHNVEEKPEQLKI* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0702 671 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 661 IPR031052 GO:0006355
Vvi9g0702 671 SMART 26again6 560 587 IPR006564 GO:0008270
Vvi9g0702 671 Pfam MULE transposase domain 262 356 IPR018289 -
Vvi9g0702 671 Pfam SWIM zinc finger 561 581 IPR007527 GO:0008270
Vvi9g0702 671 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Vvi9g0702 671 MobiDBLite consensus disorder prediction 1 28 - -
Vvi9g0702 671 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0702 Vvi-Chr9 7437811 7439826 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi9g0702 MULE 6.7e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0702 K17604 - vvi:100853055 1362.05