Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0687 ATGGCAATCACATCTCTCTCTTCTCTCAGCTTCAATCCCGACCGTCCACTTCTTCTCTTCTCCTCATCCAATGGCCCTTCTTCTTCTTCCTCCTCTTTCTTCACTGGTGGCACCCATTTCCGGACCCAAAAGAGTCTCGCCTGTGTATACTTACCTTCTTCTTCTCTATCCAGTAAAAGGGTCTCTGTGGTGGTTGCTGCTTCTTCGGACTATTATTCCACACTTGGGGTTCCCAAATCTGCCAATAGCAAGGAAATCAAGGCGGCCTATCGAAAGTTAGCTCGCCAGTATCATCCTGATGTCAACAAACAACCTGGAGCCACCGAAAAGTTCAAGGAGATTAGTGCTGCATATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTGTATGATCAATTTGGTGAAGCTGGAGTGAAGAGCGGTGTTGGGGGACAAGCTGGTGCTTATACGACTAATCCTTTTGATCTATTTGAAACCTTCTTTGGACCAAGCATGGGTGGGTTCTCTGGTATGGACCAAGCTGGATTCAGAACACGGCGGCGTACTACTGTCTCTAAAGGTGAAGATATACGTTATGACATGACTTTAAAATTTTCTGAGGCTATATTTGGGGCTGAAAAGGAATTTGAGCTTTCCCATCTGGAAACATGTGAAGTTTGCACTGGTACTGGAGCAAAGATAGGCTCCAAGATGAGGATATGCTCAACTTGTGGTGGCAGGGGTCAAGTTATGCGAACTGAACAAACACCTTTTGGCTTGTTTTCGCAGGTTTCTGTTTGTCCAACTTGTGGTGGCGATGGTGAAGTCATTTCTGAATACTGTCGAAAATGCTCTGGTGAAGGGCGTATTCGTGTTAAGAAAGATATCAAAGTTAAAGTTCCTCCAGGAGTCAGCAAGGGCAGTATTCTCAGAGTTGCTGGAGAAGGTGATGCTGGGCTACGAGGGGGCCCTCCGGGAGACCTTTTTGTATACCTTGATGTTGAAGAGATACCAGAGATCCAAAGAGATGGCATAAATCTCTGTTCAACAGTTACTGTCAGTTATCTAGATGCCATATTGGGGGCTGTTGTTAAGGTGAAGACTGTTGAAGGGGTTACTGAACTACAGATTCCATCGGGTACTCAACCTGGGGATGTACTTGTCTTGGCAAAGAAAGGTGCACCAAAACTGAACAGACCAACAATACGTGGTGACCACTTATTCACTGTTAAAGTAACTATTCCAAATCGCATCAGTGCCAAAGAACGTGAACTGCTTGAAGAGCTTGCTTTCCTAAGTAATAATACCAGCAGCCGGTCACGAACTCGCCCTAAAGCTCAGCCAGCCACAAAAAGTAGGGAAAGTCAGAAAGATGCTGTTACAGAGAAAACTGAAGATGCAGGAGATGATAATGACGTATGGAAGAAGTTAAAAGATTTTGCTGGGTCTGTTGCAAGTGGAGCTCTTAACTGGCTGAAGGACAACTTCTAG 1470 0.451 MAITSLSSLSFNPDRPLLLFSSSNGPSSSSSSFFTGGTHFRTQKSLACVYLPSSSLSSKRVSVVVAASSDYYSTLGVPKSANSKEIKAAYRKLARQYHPDVNKQPGATEKFKEISAAYEVLSDDKKRALYDQFGEAGVKSGVGGQAGAYTTNPFDLFETFFGPSMGGFSGMDQAGFRTRRRTTVSKGEDIRYDMTLKFSEAIFGAEKEFELSHLETCEVCTGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPTCGGDGEVISEYCRKCSGEGRIRVKKDIKVKVPPGVSKGSILRVAGEGDAGLRGGPPGDLFVYLDVEEIPEIQRDGINLCSTVTVSYLDAILGAVVKVKTVEGVTELQIPSGTQPGDVLVLAKKGAPKLNRPTIRGDHLFTVKVTIPNRISAKERELLEELAFLSNNTSSRSRTRPKAQPATKSRESQKDAVTEKTEDAGDDNDVWKKLKDFAGSVASGALNWLKDNF* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0687 489 SUPERFAMILY Chaperone J-domain 66 174 IPR036869 -
Vvi9g0687 489 ProSiteProfiles Zinc finger CR-type profile. 204 286 IPR001305 GO:0031072|GO:0051082
Vvi9g0687 489 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 435 - -
Vvi9g0687 489 FunFam Putative Mitochondrial DnaJ chaperone 276 323 - -
Vvi9g0687 489 Gene3D - 217 281 - -
Vvi9g0687 489 FunFam Molecular chaperone Hsp40/DnaJ family protein 333 425 - -
Vvi9g0687 489 ProSiteProfiles dnaJ domain profile. 70 134 IPR001623 -
Vvi9g0687 489 FunFam Chaperone protein dnaJ A6 chloroplastic 217 281 - -
Vvi9g0687 489 MobiDBLite consensus disorder prediction 429 465 - -
Vvi9g0687 489 Gene3D DnaJ domain 67 173 IPR036869 -
Vvi9g0687 489 Pfam DnaJ domain 70 131 IPR001623 -
Vvi9g0687 489 Pfam DnaJ C terminal domain 190 408 IPR002939 -
Vvi9g0687 489 CDD DnaJ 70 123 IPR001623 -
Vvi9g0687 489 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 204 284 IPR036410 -
Vvi9g0687 489 MobiDBLite consensus disorder prediction 440 465 - -
Vvi9g0687 489 SMART dnaj_3 69 126 IPR001623 -
Vvi9g0687 489 CDD DnaJ_C 188 411 - -
Vvi9g0687 489 Hamap Chaperone protein DnaJ [dnaJ]. 67 473 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi9g0687 489 PRINTS DnaJ domain signature 72 90 IPR001623 -
Vvi9g0687 489 PRINTS DnaJ domain signature 90 105 IPR001623 -
Vvi9g0687 489 PRINTS DnaJ domain signature 106 126 IPR001623 -
Vvi9g0687 489 PRINTS DnaJ domain signature 126 145 IPR001623 -
Vvi9g0687 489 FunFam Chaperone protein dnaJ A6 chloroplastic 67 173 - -
Vvi9g0687 489 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 340 IPR008971 GO:0006457|GO:0051082
Vvi9g0687 489 Gene3D - 187 323 - -
Vvi9g0687 489 Pfam DnaJ central domain 217 281 IPR001305 GO:0031072|GO:0051082
Vvi9g0687 489 SUPERFAMILY HSP40/DnaJ peptide-binding domain 334 419 IPR008971 GO:0006457|GO:0051082
Vvi9g0687 489 Gene3D - 333 424 - -
Vvi9g0687 489 CDD DnaJ_zf 217 281 IPR001305 GO:0031072|GO:0051082
Vvi9g0687 489 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Vvi9g0687 489 NCBIfam molecular chaperone DnaJ 70 423 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0687 Vvi-Chr9 7150525 7184178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0687 51 131 C2H2 Transcription Factor Family AT1G74250 43.678 1.77e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0687 K03686 - vvi:100268143 910.598