Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0679 ATGCCACCCCTATTCCTATGCCCTTTAACAGGACTCTCCCCCTCATTTTGGCATTTCAATCAAAGGCATCATTCACGGATTGTTTTCATTGTAGACATCAAAGCACGTAGCGACCGTCTAAGGGAGAATCGTAAGGGCAACGCCTACGCCTCTCGGTGGGTGTTACGGACACCGTCTTATTCAAGGCCTACCGCCACACTCACTGCTGTTTTGGAAAAAATGGCTGAGAAGATTGGAGCAGCTCCGCCACCAGCTTCTTTTGAGTATGAGCTTTTTGAAGGAGATCCAGACCACCTTAGAACTGTTGCAGCTACATCAACCCAGTTAAGCCCATGGATTGATCCTGCCTCTTTGAAACTTAAGCACAGGATTGGACGAGGCCTCTTTGGTGATGTTTGGTTAGCAACACATCATCAGTCCGCAGATGATTATGATGAATATCATGAAGTTGCTGTTAAGATGTTACATACGATAAGGGAGGATCACATGCAAATGTTTTTGGATAAATTTGCAGGGATATTTTTGAAATGCCGACAACTAAAAGGTGTTTGTTGGTTGCATGGTATCTCAATTAAGACAGGAAAGGTCTGCATTGCTATGAAATTTTATGAGGGATCGGTGGGTGATCGAATGGCTCATCTTAAAGGAGGCAAGCTTCCATTGTCTGATGTTTTAAGGTATGGAATCGAGTTGGCTAAAGGAATTATGGAGTTGCACTCCACAGGGGTCCTGGTGCTAAACCTTAAGCCATCTAACTTCCTGCTTAATGAACATGACCAAGTGGTTCTAGGAGATATGGGAATCCCATATCTACTCCTTGGGATTCCATTGCCCAATCCTGATATGGTTCTGAGACTTGGAACGCCAAATTACATGGCTCCAGAACAGTGGGAACCAGAAGTAAGAGGACCAATATCTTGTGAAACTGATACATGGGGTTTTGGCTGCAGCATAGTGGAGATGTTGACTGGTGTTCAACCCTGGTGTGGGAGATCAATTGAAGAAATATATCAATCAGTTGTTATTAAGCAAGAAAAACCGCATATTCCAAGCGGCCTGCCGCCTGAAGTTGAGAATGTTCTCAATGGCTGCTTTGAGTATGACCTCCGTAATCGACCTTTAATGGTAGATATTTTGCAAGCATTCGAAAGCTCACAGAATGCCGTTTACAGTGATGGAGGATGGATTGGTCTAGAAAGCAGAACATGTACAGAGAGATCAAATAGCCGTGGCTACACATCCTGGTTCCTCTCAAAGGACTCTCTCCATGTGGGTGACATAGTTCGTTCTAGAAAGCCACTAAATGCATGTAAACCTCAAATCATGGATGTTCCAGAAGGGACTGTGGTTGGTTTCGATGGTGACAATGATCGAGATGGTTTTGTTCTGGTGAAAATCCGTGGAAAACACAACCCTTTAAGAGTGCATGTGTCAACACTTGAAAGGGTCACATCTGGCTTGGTAGTGACAGATTGGGTGCGCTTGAAAGAGCCAAACAGAAAGCACTCAACTGTTGGTATTCTACATTCTGTGCAGCGTGATGGAAGTGTAGCTGTTGGATTTCTAGGGCTTGAGACTCTCTGGAGAGGGCATTCCTCTGAGCTTCAAATGGCAGAAACTTATTATGTGGGACAGTTCGTGAGGCTGAAGACAAATGTGTTTACCCCCAGGTTTGATTGGCCTCGTAAAAAGGGTGGAGCATGGGTTACTGGGAGGATTGCACAAGTCCTTCCAAATGGGTGTCTTGTCGTAAGGTTCCCAGGGAGGTTTGTGTTTGGGGTTGAATCAAACAGCTTCTTGGCTGATCCAGCTGAAGTGGAACTAGTGTCCTTTGATAAGTGTCATGGTGTGGTGGAGAAGTACCATCATATTGAGGATTTTCACTGGGCTGTAAGGCCTTTGGTAATTGCATTTGGTGTATTTACAACCTTGAAGCTTGGAGTCTTTGTTGGTGGAAATGTGTGTGTAAGAATGAGGAAGAGCCCAAGAAATCTGACCCCAAATGATGGCCAGTGTCAGGATGGCCAAGCTGGTGGCAATCCAGCATGGATTCCTCCCACAGTTGCTAACATCCTTTTCCGAGAAGGTCCTCCCACAGCTACTGCTAGGAAATACATTCATGAAGATGATGGTAACGAAGAAGAGGAAGAAAGCAAAGAAAAATCAGTGGCAGGAGAAGAAACTGAAGTAGGTGAATTTGATGACATAATAGAGTCAGTCCAGTACAAGAACCTCCGGAAAGGAGAAACAACCAAACAAGGAGACGATCTATCCTTGGAGAAACATGGGCTTTGGTTGCAAGAACAGAAGTCCAGAGTAGCAAGGCTTCAGAAACACCTCAAATCAAGATGGACTCTGGAGGATCTCATTCAGCAGCATCTCCACATGTACCATGCCCACTTCAACCGGGCCTTGGTCTCAGCCCGTCTCCAAGACGTGGCCCAACTCCTCATGCCCCAATGGGCTCCACCTCATGAGCTCGCCTCACTAGCCTGGCTCGGCGACTGGCGGCCCTCCGCAATTCTGGGCCTAATCTGGGCCCGGGCCCGCACCTCACCCTCGCTGTCGGGGTCGGATCCGGCCATCCAGCGCCTCTTGCCGCAGCTGATCCACGAGCTACGCATCGAGGAGACGGTGGTGGAGGAGGAGATGGCGGAGATCCAAGCCACCTGTGTCCTCCACCTCCCTTTCGCTCCCATGAACCACCGTACGGGTGGCGCTGCATTGCGCTGCATTCAGTCGGAGTTCAAGAAGATCCACCAAGTGATCGTTAAGGCCCAAAGCCTCAGGTTCAAGGCATTGGAGATGGTGGTGAACAATGTATTGAGCCAAACCGACGCGGCGGAGTTCTTGGTAGCATTTGCCGGAATTCAGAAGTCCATCCACCAGTTCGCGGCGCATCAAAGGCTCCGAAAGGGTCAACTGTCGGTGTGTGTGAAGGCGGTGGGAAATAGTCAGAGCTGA 2964 0.4781 MPPLFLCPLTGLSPSFWHFNQRHHSRIVFIVDIKARSDRLRENRKGNAYASRWVLRTPSYSRPTATLTAVLEKMAEKIGAAPPPASFEYELFEGDPDHLRTVAATSTQLSPWIDPASLKLKHRIGRGLFGDVWLATHHQSADDYDEYHEVAVKMLHTIREDHMQMFLDKFAGIFLKCRQLKGVCWLHGISIKTGKVCIAMKFYEGSVGDRMAHLKGGKLPLSDVLRYGIELAKGIMELHSTGVLVLNLKPSNFLLNEHDQVVLGDMGIPYLLLGIPLPNPDMVLRLGTPNYMAPEQWEPEVRGPISCETDTWGFGCSIVEMLTGVQPWCGRSIEEIYQSVVIKQEKPHIPSGLPPEVENVLNGCFEYDLRNRPLMVDILQAFESSQNAVYSDGGWIGLESRTCTERSNSRGYTSWFLSKDSLHVGDIVRSRKPLNACKPQIMDVPEGTVVGFDGDNDRDGFVLVKIRGKHNPLRVHVSTLERVTSGLVVTDWVRLKEPNRKHSTVGILHSVQRDGSVAVGFLGLETLWRGHSSELQMAETYYVGQFVRLKTNVFTPRFDWPRKKGGAWVTGRIAQVLPNGCLVVRFPGRFVFGVESNSFLADPAEVELVSFDKCHGVVEKYHHIEDFHWAVRPLVIAFGVFTTLKLGVFVGGNVCVRMRKSPRNLTPNDGQCQDGQAGGNPAWIPPTVANILFREGPPTATARKYIHEDDGNEEEEESKEKSVAGEETEVGEFDDIIESVQYKNLRKGETTKQGDDLSLEKHGLWLQEQKSRVARLQKHLKSRWTLEDLIQQHLHMYHAHFNRALVSARLQDVAQLLMPQWAPPHELASLAWLGDWRPSAILGLIWARARTSPSLSGSDPAIQRLLPQLIHELRIEETVVEEEMAEIQATCVLHLPFAPMNHRTGGAALRCIQSEFKKIHQVIVKAQSLRFKALEMVVNNVLSQTDAAEFLVAFAGIQKSIHQFAAHQRLRKGQLSVCVKAVGNSQS* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0679 987 ProSiteProfiles DOG1 domain profile. 755 971 IPR025422 GO:0006351|GO:0043565
Vvi9g0679 987 Pfam Seed dormancy control 775 845 IPR025422 GO:0006351|GO:0043565
Vvi9g0679 987 Gene3D Transferase(Phosphotransferase) domain 1 204 404 - -
Vvi9g0679 987 MobiDBLite consensus disorder prediction 707 728 - -
Vvi9g0679 987 Pfam Protein tyrosine and serine/threonine kinase 118 380 IPR001245 GO:0004672|GO:0006468
Vvi9g0679 987 Gene3D Phosphorylase Kinase; domain 1 103 202 - -
Vvi9g0679 987 ProSiteProfiles Protein kinase domain profile. 118 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0679 987 ProSitePatterns Protein kinases ATP-binding region signature. 124 153 IPR017441 GO:0005524
Vvi9g0679 987 PANTHER OS06G0639500 PROTEIN 870 981 - -
Vvi9g0679 987 SUPERFAMILY Protein kinase-like (PK-like) 119 380 IPR011009 -
Vvi9g0679 987 CDD STKc_PknB_like 119 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0679 Vvi-Chr9 7042517 7054897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0679 113 383 MAP Kinase Kinase Kinase AT2G17700 27.106 2.88e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vvi9g0679 PK_Tyr_Ser-Thr 5.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0679 - - vvi:100268161 1295.03