Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0674 ATGGCCTTCTGCTCTATGTTTTGCTGCGGAAAGGGTTCTGATGGGAAAGAGCAAGGGAAGAAGGAAGTGACATGGAGGATATTTTCTTTGAAGGAATTACATGCTGCCACAAACAATTTTAATTATGATAACAAGCTTGGAGAAGGGGGGTTTGGCAGTGTTTACTGGGGGCAGCTGTGGGATGGATCCCAAATTGCTATTAAAAGGTTGAAGGTCTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCACGGGTTCGGCACAAGAATCTTTTGAGTTTACGTGGCTATTGTGCTGAGGGGCAAGAGCGTCTAATAGTGTATGACTACATGCCAAATTTGAGTTTACTCTCTCATCTTCATGGCCAGCACTCAGCAGAATGCCACCTTGATTGGAACCGACGGATGAATATTGCAATTGGGTCTGCTGAGGGGATTGTTTATCTTCACCACCATGCAACTCCACATATAATCCACAGAGACATTAAAGCGAGCAATGTATTGCTAGATTCAGAATTCCAGGCTCAGGTTGCTGATTTTGGATTTGCCAAGCTAATCCCTGATGGTGCAACACATGTGACCACAAGAGTTAAGGGTACCCTTGGATACCTTGCTCCTGAGTATGCCATGTTTGGCAAGGCATCAGAGAGTTGTGATGTTTACAGCTTTGGCATTCTCTTGCTAGAGCTTGTTAGTGGCAAGAGACCCATCGAGAAAATGAGTTCAACAATGAAGCGCACAATCACTGATTGGGCTCTTCCATTGGCATGTGAGAAGAAGTTCAATGATCTGGCAGACCCAAAGCTGAATGGCAAGTTTGTGGAGGAAGAGCTAAAAAGAGTCGTCTTGGTTGCACTTGTCTCTGCTGACAGTAAGCCCGAGAAAAGACCAACAATGCTAGAAGTCCTTGAGCTACTTAAGGGAAATTCAAAAGAGAAGTTGGCTGATCTAGAAAATAATGATTTGTTCAAGGGCCCTCAGACTGGAGGTTATACTGATGGGGGTACGGGGCCTGAAGCAAGCCCAGACATCATCTCAGAAGAGAACGATACAAACGAAGAATTAAAAGAGATAAAACCTGATCCAGGAAATCCTCACCCTCATGGTAGCTGA 1128 0.4459 MAFCSMFCCGKGSDGKEQGKKEVTWRIFSLKELHAATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAIKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECHLDWNRRMNIAIGSAEGIVYLHHHATPHIIHRDIKASNVLLDSEFQAQVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMFGKASESCDVYSFGILLLELVSGKRPIEKMSSTMKRTITDWALPLACEKKFNDLADPKLNGKFVEEELKRVVLVALVSADSKPEKRPTMLEVLELLKGNSKEKLADLENNDLFKGPQTGGYTDGGTGPEASPDIISEENDTNEELKEIKPDPGNPHPHGS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0674 375 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0674 375 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Vvi9g0674 375 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0674 375 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 320 - -
Vvi9g0674 375 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Vvi9g0674 375 MobiDBLite consensus disorder prediction 354 368 - -
Vvi9g0674 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vvi9g0674 375 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Vvi9g0674 375 Gene3D Transferase(Phosphotransferase) domain 1 116 328 - -
Vvi9g0674 375 CDD STKc_IRAK 46 313 - -
Vvi9g0674 375 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0674 375 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Vvi9g0674 375 MobiDBLite consensus disorder prediction 323 375 - -
Vvi9g0674 375 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Vvi9g0674 375 Coils Coil 305 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0674 Vvi-Chr9 6967355 6976360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0674 28 339 Trihelix Transcription Factor Family AT1G70460 46.835 2.38e-91 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vvi9g0674 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0674 - - vvi:100252460 764.222