Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0653 ATGTCTTGGAACCCAGAAAGAGCCAAGAGCCAAGAGCCAATAGCCCTGGAGACCCAATTGTTTCTGCATCAGAGTCAAAGAAACGAGGTCAGTTATGTGGTTGTAATTTGTCATCTTCTTTTGAGCTCCATCAATACCTTTACACAACCCTTTTGTGTTCTTGATCTGAAAATGGTTTTCTCCACTGTTGAGCCCACCAAACACTTCCACTATAGTTTCTTGCAGTGTTCTTTTCTTACTTTCAGAAATCAGTACATGGGGGCAGCTAGGGAAACCATGGGTTGGTTCCGTTTTCTTAGAACCTTTTGTTTGTGCCTTATCCTTGTGTTGAAAATCTGTATGGCCAGCACTCAAAATACTGGCCAGATTTATCCTGGGTTTCAAGGGTCTCAAATGGAGTGGAAGGATAATAAAGGGATGTTTCTGCTTTCCAACAGTTCAACATTTGCTTTGGGCTTCTTGAATACCCTTGAAGGGTTGTTTGTACTTGTTGTCATTCATGTGGCTAGTTCCAAAGCAGTTTGGACTGCTAATAGGAGCTTCTTGATTCAAAATTCCGATAAATTTGTGTTTGAGAAAAATGGGAATGCTTACTTGAAAGGTGGCGATAAAATAATTTGGTCCACAGATACAGCAGGGCAAGGTGTTACAGCCATGGAATTGCAGGATACAGGAAACTTGGTAGTACTTGGTGAGAATGGGAGAATTCTCTGGCAGAGTTTCAGTCATCCCACCGATACGCTTTTATCCGGCCAGGAATTTGTGGAAGGAATGAAACTTAAAGGTTTTTCTAACCGTGATAACTTGTTTAATTATCTTGAAATGAAATCTGGGGATTTGATTTTGTATGCAGGGTTTCAAACTCCACAAACCTATTGGTCCATGTCGAATGAGAGCCGGAAAACCATTTACAAGGGCCATGGCAAGGTCCACTCTGCTTCCATGATGTCCAATTCATGGAATTTTTATGATCAAAACCAAGCCTTGGTTTGGCAGTTTAACTTCTCAGAGAATTTGGATCCAAATGTCACATGGGCTGGTGTTTTAGACTCTGAAGGGTCGATTTCTTTCTATGATCTCCAAAAGGGAAATTTAGCTCCTGCTGAGTCAACTAAGATTCCTCAAAATTCATGCAGTGTTCCCGAGCCTTGTGAGCCATATTATGTTTGTAGTGTTGACAACAGATGCCAGTGTCCTTCAGCTCTCAACTCTAGCGTTAACTGCAAGCCGCAGATCACATCAGTCTGTAATGTCTCAAAAAATTCAGTAGAGCTTTTACATAACAGTTCAGGCAATTGCTTTCTGTTTGACCAGATAGGAAGCTTTCAACGCTCTAATTGGTATTCTTCTGGCTTCATTTCATACGTTAAGGTCTCTAATAATGGAGATCTAGATGGTGGGCAAAATCGTTCAAGAGAGGAAAGAAAAGGTGGGAAGATCATCCTAGTTATTGTGCTCATTGCTGTTGCAACAGTACTGGTTATTTTTGGCGTAGTTTATCTAGGGTTCAGGTACCGCCGCGAAAAGGAGATACAAGAATGTTCCCCTGATAACTTGGAAGAAGATGATTTCTTGGATAGTATTTCTGGGATGCCTATTCGCTTCCGTTATAAGGAACTTCAGAATGCCACCAGCAACTTCTCTGAGAAGCTTGGCCAAGGTGGGTTTGGATCTGTCTACAAAGGGGTGCTCCCAGATGGAACACAATTGGCAGTTAAAAAATTGGAGGGCGTCGGGCAAGGGAAGAAGGAATTCAGAGCTGAAGTTTGCACCATAGGGAGTATCCACCATGTTCATCTGGTCAAGCTCAAAGGATTCTGCAATGAGGGGGCTCACCGGCTTCTAGTTTATGAGTTCTTGGGAAAAGGCTCTTTAGATAAATTGATCTTCAAGAACAATAGAAAGGATCTCCTGTTAGACTGGGAAACAAGATTTAGTATTGCATTGGGTACGGCAAAGGGATTAGCATATCTCCATGAGGAGTGTGATCCGAAGATCATCCACTGTGATATAAAACCAGAAAATGTTCTTCTTGATGATAATTACCTTGCCAAAGTCTCAGATTTTGGCTTAGCTAAGTTAATGAACCGGGACCAGAGCCATGTGTTCACAACAGTGAGGGGTACTAGAGGGTACCTTGCACCTGAGTGGATCGCAAACCATGCCATATCAGAGAAGAGCGATGTCTTCAGCTTTGGTATGGTCTTGCTTGAGATCATTGGGGGAAGGAAAAATTATGATCCGAAAGAGACTGCACAGAAAGCCCATTTTCCGTCTTACGCCTTTGAGAAGATGAAGGAAGGAAATTTGAGAGAGATCCTCGATCCAGAGCTAAAAATTGATGGAAACTATGAAAAAGTCAGCAATGCAATTAAAGTTGCATTATTGTGTATACAGGAAGAGATGGACAGAAGGCCACCGATGACTAAGGTAGTCCAAATGCTTGAAGGTGTTTGTGATGTACCTCAGCCACCAACCACCTCTCAAAGGATTTTTCATATTTACTCAACTTTGCTCAAATCAAGCAGTGAAGAGGGTACTTCATCAGAACAAAATTTGTTGGAACCAATTGATTGGAACAGTCTAGCACCCTCAAATACTTTGGTGATGCCTTTGTGTACTTTCCTAATTATGTTTAAAATCTCAAGTTTTGCACTAGTGGGCATTAGAAAGTTTTCTAGCTTTTTGTGA 2691 0.4166 MSWNPERAKSQEPIALETQLFLHQSQRNEVSYVVVICHLLLSSINTFTQPFCVLDLKMVFSTVEPTKHFHYSFLQCSFLTFRNQYMGAARETMGWFRFLRTFCLCLILVLKICMASTQNTGQIYPGFQGSQMEWKDNKGMFLLSNSSTFALGFLNTLEGLFVLVVIHVASSKAVWTANRSFLIQNSDKFVFEKNGNAYLKGGDKIIWSTDTAGQGVTAMELQDTGNLVVLGENGRILWQSFSHPTDTLLSGQEFVEGMKLKGFSNRDNLFNYLEMKSGDLILYAGFQTPQTYWSMSNESRKTIYKGHGKVHSASMMSNSWNFYDQNQALVWQFNFSENLDPNVTWAGVLDSEGSISFYDLQKGNLAPAESTKIPQNSCSVPEPCEPYYVCSVDNRCQCPSALNSSVNCKPQITSVCNVSKNSVELLHNSSGNCFLFDQIGSFQRSNWYSSGFISYVKVSNNGDLDGGQNRSREERKGGKIILVIVLIAVATVLVIFGVVYLGFRYRREKEIQECSPDNLEEDDFLDSISGMPIRFRYKELQNATSNFSEKLGQGGFGSVYKGVLPDGTQLAVKKLEGVGQGKKEFRAEVCTIGSIHHVHLVKLKGFCNEGAHRLLVYEFLGKGSLDKLIFKNNRKDLLLDWETRFSIALGTAKGLAYLHEECDPKIIHCDIKPENVLLDDNYLAKVSDFGLAKLMNRDQSHVFTTVRGTRGYLAPEWIANHAISEKSDVFSFGMVLLEIIGGRKNYDPKETAQKAHFPSYAFEKMKEGNLREILDPELKIDGNYEKVSNAIKVALLCIQEEMDRRPPMTKVVQMLEGVCDVPQPPTTSQRIFHIYSTLLKSSSEEGTSSEQNLLEPIDWNSLAPSNTLVMPLCTFLIMFKISSFALVGIRKFSSFL* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0653 896 SMART serkin_6 545 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0653 896 SUPERFAMILY alpha-D-mannose-specific plant lectins 172 295 IPR036426 -
Vvi9g0653 896 FunFam serine/threonine-protein kinase PBS1-like 514 619 - -
Vvi9g0653 896 SUPERFAMILY Protein kinase-like (PK-like) 527 816 IPR011009 -
Vvi9g0653 896 CDD B_lectin 139 244 IPR001480 -
Vvi9g0653 896 Gene3D Phosphorylase Kinase; domain 1 513 619 - -
Vvi9g0653 896 ProSitePatterns Protein kinases ATP-binding region signature. 551 574 IPR017441 GO:0005524
Vvi9g0653 896 Gene3D Transferase(Phosphotransferase) domain 1 620 829 - -
Vvi9g0653 896 Gene3D - 133 243 IPR036426 -
Vvi9g0653 896 CDD STKc_IRAK 551 817 - -
Vvi9g0653 896 PIRSF SRK 96 450 IPR024171 GO:0004674
Vvi9g0653 896 PIRSF SRK 416 867 IPR024171 GO:0004674
Vvi9g0653 896 Pfam Protein kinase domain 548 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0653 896 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 133 826 - -
Vvi9g0653 896 SMART blect_4 133 244 IPR001480 -
Vvi9g0653 896 ProSiteProfiles Protein kinase domain profile. 545 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0653 896 Pfam D-mannose binding lectin 174 254 IPR001480 -
Vvi9g0653 896 FunFam S-receptor-like kinase 5 620 824 - -
Vvi9g0653 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 666 678 IPR008271 GO:0004672|GO:0006468
Vvi9g0653 896 ProSiteProfiles Bulb-type lectin domain profile. 127 242 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0653 Vvi-Chr9 6731971 6735116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0653 471 827 Receptor kinase-like Gene Family AT5G20050 41.799 9.85e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi9g0653 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0653 - - vvi:100259444 1551.18