Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0646 ATGTCTGAATTCAATGAGATTCCGCTTCATGGAACGCTCCACGCTACGATATTTGAGATCGACAGGCTCCACAGCGGAGGCGCTCCCAAATTCTTCCGAAAGCTTGTGGAGAACATTGAGGAGACTGTCGGTTTTGGCAAAGGAACCTCTAAACTCTATGCAACTATTGATATAGGAAGAGCTAGAGTTGGGAGGACTCGGATGATAGAAAATGAACCCTCCAATCCCAGGTGGTATGAATCATTTCACATTTACTGTGCCCATATGGCCGGGCATATTATATTCACTGTAAAAGATGACAATCCCATTGGGGCGACTTTGATTGGAAGAGCATCTGTACCTATTCAGGAGATCTTAGGGGGAGAGGAAGTAGATAAATGGGTAGAAATTGTTAATGAAGAGCTGAAGCCTATACATGGAGGTTCTAAGATCCATGTGAAACTACAATATTTTGAAGTCACTGCAGATCGTAGTTGGGGTCGGGGAATTAGAAGTCTTAAATTTCCTGGGGTTCCATTCACATTCTTTTCACAGAGAAAAGGATGTCACGTCTCTTTGTACCAAGATGCTCATGTTCCAGATAATTTTGTCCCAAAAATACCCCTCGCCGATGGCAAGTACTATGAGCCCCGCAGATGTTGGGAAGATGTCTTTGATGCAATCAATAACGCAAAACACTTGATCTACATTACTGGCTGGTCTGTATACACAGAAATCACCTTGGTGCGGGACTCAAGGAGACCAAAACCAGGAGGAGACTTGACCATTGGTGAGTTGCTTAAGAAGAAGGCAAGTGAAGGTGTTAGGGTTCTAATGCTTGTTTGGGATGATCGAACGTCTGTTCCTTTACTGAAAAAGGATGGCTTGATGGGTACCCATGACGAAGAAACTGAACATTACTTTCACGACACTGATGTACACTGTGTATTGTGCCCCCGCAATCCTGATGATGGTGGAAGTATAGTTCAGGATTTACAAATTTCTACCATGTTCACTCATCACCAGAAGATTGTTGTGGTGGACAGCGAGATGCCCAGTGGAGGATCAGAAAAGAGGAGGATTGTAAGTTTTGTTGGGGGTATCGATCTCTGTGATGGTAGATATGATACCCAATTCCATTCACTTTTCAGGACACTAGACACAGCACACCATGACGATTTCCATCAGCCAAACTTTGAAGGTGCTTCAATCCAAAAAGGTGGACCAAGGGAGCCTTGGCATGATATCCATTCCAGACTTGAAGGACCTATTGCCTGGGATGTCCTCTTTAATTTTGAGCAGAGATGGAGAAAGCAAGGTGGGAAGGATATACTTCTTCAATTGAGAGATCTTGATGATGTTATTATTCCCCCATCTCCTGTTATGTTCCCTGATGACCAGGAGGTATGGAACGTCCAGTTATTCAGATCTATTGATGGTGGGGCTGCCTTTGGCTTCCCTGAGACACCTGAAGAGGCAGCAAGAGCTGGGCTTGTCAGTGGGAAGGACAATATCATTGACCGGAGCATTCAGGATGCTTATATTAATGCTATTCGACGGGCAAAGGATTTCATTTATATTGAAAATCAGTATTTTCTGGGAAGCTCTTTTGGCTGGGCTCCTGATGAGGGCATTAAGATTGAAGACGTTGGTGCTTTGCATCTGATTCCAAAGGAACTCTCACTGAAGATTGCAAGTAAGATTGAGGCAGGGGAGAAGTTCACTGTTTATATTGTAGTTCCAATGTGGCCAGAGGGTATGCCAGAGAGTGGATCAGTCCAGGCAATATTAGATTGGCAGAGGAGGACAATGGAGATGATGTATAAAGATATCATTAAGGCTCTTGCTGATAAGGGTATTGAGGATGACCCTAGAAATTATTTAACATTTTTCTGCCTTGGAAATCGGGAGGTCAAGAAGAGTGGAGAATATGAACCTTCAGAGCATCCTGAGCCTGATACAGACTACAGTAGAGCCCAGGAGGCCCGACGTTTCATGATTTATGTTCATGCCAAGATGATGATTGTTGATGACGAATACATCATAATCGGATCCGCCAACATCAACCAGAGATCCATGGATGGTGCCAGAGACTCCGAGATAGCCATGGGAGGATACCAACCATATCACTTGGCAAGCAGGCAGCCAGCACGAGGTCAGATCCATGGTTTCCGAATGTCATTGTGGTACGAGCACCTTGGCATGCTCGATGAGTCCTTCCTCCAGCCAGAAAGCAAGGAGTGCATCCAAAAGGTGAACCAGATCGCTGAAAAATACTGGGATCTGTACGCAAGCGAGACACTTGAGCATGACCTCCCTGGTCATCTCCTCCGCTACCCTATAGCGGTCTCCTGTGGGGGAGACATAACAGAGCTTCCAGGAGCTGAGTTTTTCCCCGACACCAAGGCCCGCGTTCTTGGCACCAAGTCCGAATATTTGCCTCCAATCCTCACAACTTAG 2439 0.4539 MSEFNEIPLHGTLHATIFEIDRLHSGGAPKFFRKLVENIEETVGFGKGTSKLYATIDIGRARVGRTRMIENEPSNPRWYESFHIYCAHMAGHIIFTVKDDNPIGATLIGRASVPIQEILGGEEVDKWVEIVNEELKPIHGGSKIHVKLQYFEVTADRSWGRGIRSLKFPGVPFTFFSQRKGCHVSLYQDAHVPDNFVPKIPLADGKYYEPRRCWEDVFDAINNAKHLIYITGWSVYTEITLVRDSRRPKPGGDLTIGELLKKKASEGVRVLMLVWDDRTSVPLLKKDGLMGTHDEETEHYFHDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPSGGSEKRRIVSFVGGIDLCDGRYDTQFHSLFRTLDTAHHDDFHQPNFEGASIQKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILLQLRDLDDVIIPPSPVMFPDDQEVWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSFGWAPDEGIKIEDVGALHLIPKELSLKIASKIEAGEKFTVYIVVPMWPEGMPESGSVQAILDWQRRTMEMMYKDIIKALADKGIEDDPRNYLTFFCLGNREVKKSGEYEPSEHPEPDTDYSRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLASRQPARGQIHGFRMSLWYEHLGMLDESFLQPESKECIQKVNQIAEKYWDLYASETLEHDLPGHLLRYPIAVSCGGDITELPGAEFFPDTKARVLGTKSEYLPPILTT* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0646 812 PIRSF PLD_plant 1 812 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi9g0646 812 Gene3D Endonuclease Chain A 479 701 - -
Vvi9g0646 812 SMART pld_4 658 685 IPR001736 GO:0003824
Vvi9g0646 812 SMART pld_4 329 367 IPR001736 GO:0003824
Vvi9g0646 812 FunFam Phospholipase D delta 204 447 - -
Vvi9g0646 812 Gene3D C2 domain 10 159 IPR035892 -
Vvi9g0646 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 658 685 IPR001736 GO:0003824
Vvi9g0646 812 SMART C2_3c 12 127 IPR000008 -
Vvi9g0646 812 ProSiteProfiles C2 domain profile. 1 128 IPR000008 -
Vvi9g0646 812 Pfam C2 domain 39 130 IPR000008 -
Vvi9g0646 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 329 367 IPR001736 GO:0003824
Vvi9g0646 812 FunFam Phospholipase D 470 704 - -
Vvi9g0646 812 CDD C2_plant_PLD 9 151 - -
Vvi9g0646 812 Gene3D Endonuclease Chain A 201 443 - -
Vvi9g0646 812 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 152 IPR035892 -
Vvi9g0646 812 PANTHER PHOSPHOLIPASE D 8 800 IPR015679 -
Vvi9g0646 812 Pfam Phospholipase D C terminal 730 802 IPR024632 -
Vvi9g0646 812 Pfam Phospholipase D Active site motif 659 685 IPR001736 GO:0003824
Vvi9g0646 812 Pfam Phospholipase D Active site motif 329 367 IPR001736 GO:0003824
Vvi9g0646 812 SUPERFAMILY Phospholipase D/nuclease 486 742 - -
Vvi9g0646 812 SUPERFAMILY Phospholipase D/nuclease 157 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0646 Vvi-Chr9 6679306 6685200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0646 9 812 Phospholipase D Gene Family (Wang group) AT3G15730 81.638 0.0 1397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0646 K01115 - vvi:100232987 1661.74