Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0645 ATGGTACAGACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCGCTGAAATTCGCCACCCTTTACTCAAGAGGAGGGTGTGGTTAGGGACGTTTGAGACTGCAGAAGAGGCCGCTCGAGCCTACGACGAGGCGGCGGTGATGATGAGCGGGCGCAATGCCAAAACAAACTTCCCCACTGCCGTGAATCACGCCAACAATGAGGAGTCGTCCTCTTCCTCTCCCACCGCTCTTTCTGCAATACTCAGCGCCAAGCTGCGTAAATGTTGTAAATCCCCATCTCCCTCCCTCACTTGCCTAAGGCTGGACACCGAGAATTCCAATATAGGAGTGTGGCAGAAGCGGGCGGGGACGCGATCCGACTCCAATTGGGTGATGACAGTGGAGCTTGGGAAGAAGAATGAGCAGGCGGCGGAGGCAGGAGCGGAGGCGGAAGTGGCCATGGTGGACACTCCAGAGACCTCATCATCAGGATTAAGGGAAGGTAGTGGGGATCATGGGATGGATGAAGAGGAGAGGATTGCATTGCAGATGATAGAGGAACTGCTAAACAGGAATTGA 573 0.5515 MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRVWLGTFETAEEAARAYDEAAVMMSGRNAKTNFPTAVNHANNEESSSSSPTALSAILSAKLRKCCKSPSPSLTCLRLDTENSNIGVWQKRAGTRSDSNWVMTVELGKKNEQAAEAGAEAEVAMVDTPETSSSGLREGSGDHGMDEEERIALQMIEELLNRN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0645 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 144 - -
Vvi9g0645 190 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vvi9g0645 190 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vvi9g0645 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vvi9g0645 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vvi9g0645 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vvi9g0645 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vvi9g0645 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vvi9g0645 190 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vvi9g0645 190 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0645 Vvi-Chr9 6658070 6658773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0645 1 190 AP2-EREBP Transcription Factor Family AT1G15360 66.341 3.30e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi9g0645 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0645 - - vvi:100250826 336.65