Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g0639 | ATGGGAGAAGCAAGGGACAATGATGCATACGAGGAAGAGCTTCTCGACTACGAAGAAGAAGATGAAAAAGCCCCCGACTCCGTTGCTTCCAAAGCCGCAGGCGAATCCGCCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTCTTGTTAAAGCCAGAGCTTCTACGATCAATTGTAGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAGTGCATCCCTCAAGCTATCTTAGGAATGGATGTCATCTGTCAAGCGAAATCTGGGATGGGAAAAACAGCTGTCTTTGTTCTCTCAACTCTGCAGCAAATTGAGCCTGTTGCAGGACAAGTTGCTGCACTAGTTCTTTGTCATACTAGAGAATTAGCTTACCAGATCTGTCATGAATTCGAGAGATTCAGCACCTATTTGCCTGATATTAAGGTGGCTGTCTTCTATGGTGGTGTCAGTATCAAGACTCACAAGGATTTGCTGAAAAATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGAATATTGGCTCTTGCAAGGGATAAAGACCTTGGGTTAAAACACGTGAGGCATTTTATCCTTGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGGAGAGATGTGCAGGAGATCTTCAAGATGACACCTCATGATAAGCAAGTTATGATGTTTTCAGCTACACTCAGCAAAGAGATTCGGCCTGTTTGCAAGAAGTTTATGCAGGATCCAATGGAAATTTATGTGGATGATGAGGCCAAATTGACACTCCATGGTCTTGTCCAGCACTATATTAAATTGAGTGAGCTGGAGAAGAACCGGAAGCTGAATGACCTCCTTGATGCCTTGGACTTCAACCAAGTTGTCATTTTTGTTAAAAGTGTGAGCAGAGCAGCAGAGCTGAACAAGTTGCTGATGGAGTGCAATTTCCCTTCTATCTGCATTCATTCTGGGATGCCTCAGGAAGAAAGGTTAACACGCTACAAGAATTTCAAGGAGGGGCACAAAAGAATCCTTGTGGCAACAGATTTAGTTGGCAGAGGAATTGATATTGAGCGAGTTAACATTGTTATAAACTATGACATGCCGGACTCTGCTGACACCTACCTTCACAGGGTTGGTAGGGCTGGTAGGTTTGGAACCAAAGGGCTTGCAATAACATTTGTCTCATCTGCATCCGACTCTGATGTTCTTAATCAGGTTCAGGAGAGGTTTGAGGTGGATATAAAGGAACTTCCTGAGCAAATTGATACTTCAACATACATGCCATCATGA | 1287 | 0.4343 | MGEARDNDAYEEELLDYEEEDEKAPDSVASKAAGESAKKGYVGIHSSGFRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIVVGTPGRILALARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS* | 429 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g0639 | 428 | SMART | helicmild6 | 303 | 384 | IPR001650 | - | |
Vvi9g0639 | 428 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
Vvi9g0639 | 428 | FunFam | DEAD-box ATP-dependent RNA helicase | 260 | 428 | - | - | |
Vvi9g0639 | 428 | SMART | ultradead3 | 66 | 267 | IPR014001 | - | |
Vvi9g0639 | 428 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Vvi9g0639 | 428 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 279 | 424 | IPR001650 | - | |
Vvi9g0639 | 428 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 35 | 253 | - | - | |
Vvi9g0639 | 428 | CDD | SF2_C_DEAD | 264 | 393 | - | - | |
Vvi9g0639 | 428 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 78 | 251 | IPR014001 | - | |
Vvi9g0639 | 428 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 47 | 75 | IPR014014 | GO:0003724 | |
Vvi9g0639 | 428 | Pfam | DEAD/DEAH box helicase | 72 | 237 | IPR011545 | GO:0003676|GO:0005524 | |
Vvi9g0639 | 428 | Gene3D | - | 260 | 427 | IPR027417 | - | |
Vvi9g0639 | 428 | Pfam | Helicase conserved C-terminal domain | 277 | 384 | IPR001650 | - | |
Vvi9g0639 | 428 | CDD | DEADc_DDX39 | 46 | 253 | - | - | |
Vvi9g0639 | 428 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 45 | 406 | - | - | |
Vvi9g0639 | 428 | Gene3D | - | 43 | 259 | IPR027417 | - | |
Vvi9g0639 | 428 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 116 | 401 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi9g0639 | Vvi-Chr9 | 6583679 | 6602208 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi9g0639 | 1 | 428 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 84.861 | 0.0 | 775 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g0639 | K12812 | - | vvi:100268003 | 840.491 |