Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0592 ATGGTGACAGTTCTGAGATTGTCTTGTTTTGTGAAATTTCAACTTGAAGATGCAGAGAAAGCCCTCACTTTAGGTCCATTGTTGGCTAAATTCAACACCATGAAAGTGATTGGGAGAAAGGGTTATGTCTCTTTTATTGATTATAAGGTACTAGAAACTGCAACAAACAATTTTCAGGAAAGTAATATCCTGGGTGAGGGCGGGTTTGGTTGTGTCTACAAGGCGCGGTTGGATGATAACTCCCATGTGGCTGTGAAGAAGGTAGATGGTAGAGGCCAGGATGCTGAGAGAGAATTTGAGAATGAGGTGGATTTGTTGACTAAAATTCAGCACCCAAATATAATTTCTCTCCTGGGTTACAGCAGGCATGAGGAGTCAAAGTTTCTTGTCTATGAGCTGATGCAAAATGGATCTCTGGAAACTCAATTGCACGGACCTTCTCATGGATCATCTCTAACTTGGCATATTCGAATGAAAATCACTTTGGATGCAGCAAGAGGATTAGAGTATCTACATGAGCACTGCAACCCACCAGTCATCCATAGAGATCTTAAATCATCTAATATTCTTCTGGATTCAAACTTCAATGCCAAGCTTTCGAATTTTGGTCTAGCTGTAATTGATGGGCCTAAAAACAAGAACAACTTGAAGCTTTCAGGCACCCTGGGTTATCTAGCTCCTGAGTATCTTTTAGATGGTACAGAATCTAAACTTCTTATAATTGCTCAAAACTGTTGGTATGGGATTCCTGAAAGAGGGTTAGTTGATTCACTAACTTGGGAACTCTATTTCAGATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTTAGTATGAATGAGATGGCTGAAATTGTCCTAAGCTTTGAGAATAAGAACCTACCCATCCATCACATTCCTGGCCCAGAGGGCGTACGTGGTCGAAACTCACACAATAATCTGATCAAGGAGAAGCTTGTTGGTTTCCCATGTTGTTCTCCAGAGGCTGAACTACTACATTTTGTGACAAGCGCAGAGTTTTGCAGTAAGGATTCAGCTGATGGATCCTTAGAGGTTTTGAGCATTACTCACTTTCTACTTTCTTCCCATCTAACTTCAGAAAAGGCATCTTGA 1131 0.4103 MVTVLRLSCFVKFQLEDAEKALTLGPLLAKFNTMKVIGRKGYVSFIDYKVLETATNNFQESNILGEGGFGCVYKARLDDNSHVAVKKVDGRGQDAEREFENEVDLLTKIQHPNIISLLGYSRHEESKFLVYELMQNGSLETQLHGPSHGSSLTWHIRMKITLDAARGLEYLHEHCNPPVIHRDLKSSNILLDSNFNAKLSNFGLAVIDGPKNKNNLKLSGTLGYLAPEYLLDGTESKLLIIAQNCWYGIPERGLVDSLTWELYFRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKNLPIHHIPGPEGVRGRNSHNNLIKEKLVGFPCCSPEAELLHFVTSAEFCSKDSADGSLEVLSITHFLLSSHLTSEKAS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0592 376 ProSiteProfiles Protein kinase domain profile. 58 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0592 376 FunFam Protein kinase superfamily protein 25 133 - -
Vvi9g0592 376 Gene3D Phosphorylase Kinase; domain 1 26 133 - -
Vvi9g0592 376 SMART serkin_6 58 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0592 376 Pfam Protein kinase domain 58 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0592 376 SUPERFAMILY Protein kinase-like (PK-like) 40 234 IPR011009 -
Vvi9g0592 376 Gene3D Transferase(Phosphotransferase) domain 1 134 239 - -
Vvi9g0592 376 FunFam Os07g0541700 protein 134 221 - -
Vvi9g0592 376 Gene3D - 269 375 - -
Vvi9g0592 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vvi9g0592 376 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 233 - -
Vvi9g0592 376 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0592 Vvi-Chr9 6039156 6040954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0592 17 233 Receptor kinase-like Gene Family AT1G80640 55.963 1.15e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vvi9g0592 Pkinase 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0592 - - vvi:100253157 484.182