Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0591 ATGGGCAACATTTGCTCCATTTCACTCCCCGTTGACCGCATTGTCTCTAGCTTCTGGGATGGCACTACTGAGCATGCAAATTACCTGCGCAAACTCCCTGAAAATCTGGTAGAATTGGGAACCGCTTGTGAAAGATTGAGGGAGTTAAGGAACGATGTGAAGAAGAAGGTGGATATTGCTGAGAGGGAACAAATGCAGCCGCTGGACCAAGTACAAGGGTGGCTTTCAAGGGTTGAAACTCTGGAAACTCAAGTCACTCAACTGATTGGAGATGGCACCGAGGAGGTTGACAAGAAATGTCTCGATGGTTCCTGTCCTAGGCATTGTAGGACCAGATACAAGTTGGGGAAGAGAGTAGCTAGAAAGTTGAAAGAAGTGGACATTCTAATGAGCCAAAGACCTTCGGATGTGGTGGCTGAGAGGTTACCTTCACCTCGCCTAGGTGAAAGGCCTAGTGAAGCAACCGTCGGCATGAATTCCAGAATTGGTAAGGTTTGGAGCAGCCTTCATCAAGAACAAGTGGGAATTATCGGCCTATATGGATTAGGAGGAGTTGGGAAAACCACCCTCTTAACCCAAATCAATAATGCTTTTACTAAAAGAACCCATGATTTTGATTTTGTGATCTGGGCAACAGTTTCCAAAAATGTAAACCTTGAAAACATTCAGGACGACATCTGGAAGAAGATAGGGTTTTGTGATGATAAATGGAAAAACAAAAGTCGAGATGAGAAAGCTACGAGCATATGGAGAGTCCTGAGCGAAAAGAGGTTTGTGCTGTTGCTAGATGATTTATGGGAGTGGTTGGATTTATCAGACGTCGGGGTCCCATTCCAAAATAAGAAAAATAAGATAGTATTCACCACTCGATCAGAAGAGGTGTGCGCTCAAATGGAAGCTGATAAGAAGATCAAAGTGGAATGCCTAACATGGACAGAATCCTGGGAATTGTTACGAATGAAGCTTGGAGAAGACACTCTCGATTTCCATCCTGATATACCAGAACTCGCTCAAGCCGTTGCACAAGAGTGTTGCGGTTTGCCACTTGTGCTAACTACCATGGGCAGGGCCATGGCTTGTAAGAAGACACCGGAGGAATGGAAGTATGCAATAAAAGTGTTACAAAGCTCTGCCTCAAAATTTCCAGGTATGGGGAACAAAGTGTTTCCTCTTTTAAAATACAGTTATGATTGCTTACCCATCGAAGTTTCCAGATCTTGCTTCTTGTATTGTTCTCTATATCCGGAAGATTATAAGATGTCAAAATCAAGTTTGATAAACCGTTGGATTTGTGAAGGCTTTTTAGATGAATTTGATGACAGGGAAGGAGCAAAAAACCAGGGTTACAACATTATTGGCACTCTGATTCATGCATGTCTATTAGAAGAAGCTGATGTTGATTATCGAGTAAAACTGCATGATGTAATACGTGATATGGCATTGTGGATAGCTTGTGAAACTGGGAAGGAGCAGGACAAGTTCTTGGTGAAGGCCGACAGTACGTTAACTGAAGCTCCTGAAGTTGCTAGATGGATGGGGCCAAAAAGGATTTCACTGATGAATTACCATATTGAGAAACTAACAGGGTCTCCCGATTGCCCCAATCTCTTAACTTTGTTTCTTCGGAATAATAATTTGAAGATGATCTCTGATAGTTTCTTCCAGTTTATGCCAAATCTAAGAGTTTTAGACTTGTCAAGGAATACTATGACTGAATTACCACAGGGAATCTCTAATTTGGTTTCATTACAGTATCTCAGCCTATCAAAAACCAACATAAAAGAGTTGCCAATTGAGTTGAAGAACCTGGGTAACTTGAAATATGAAAATTCATGCCAATGA 1842 0.4197 MGNICSISLPVDRIVSSFWDGTTEHANYLRKLPENLVELGTACERLRELRNDVKKKVDIAEREQMQPLDQVQGWLSRVETLETQVTQLIGDGTEEVDKKCLDGSCPRHCRTRYKLGKRVARKLKEVDILMSQRPSDVVAERLPSPRLGERPSEATVGMNSRIGKVWSSLHQEQVGIIGLYGLGGVGKTTLLTQINNAFTKRTHDFDFVIWATVSKNVNLENIQDDIWKKIGFCDDKWKNKSRDEKATSIWRVLSEKRFVLLLDDLWEWLDLSDVGVPFQNKKNKIVFTTRSEEVCAQMEADKKIKVECLTWTESWELLRMKLGEDTLDFHPDIPELAQAVAQECCGLPLVLTTMGRAMACKKTPEEWKYAIKVLQSSASKFPGMGNKVFPLLKYSYDCLPIEVSRSCFLYCSLYPEDYKMSKSSLINRWICEGFLDEFDDREGAKNQGYNIIGTLIHACLLEEADVDYRVKLHDVIRDMALWIACETGKEQDKFLVKADSTLTEAPEVARWMGPKRISLMNYHIEKLTGSPDCPNLLTLFLRNNNLKMISDSFFQFMPNLRVLDLSRNTMTELPQGISNLVSLQYLSLSKTNIKELPIELKNLGNLKYENSCQ* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0591 613 FunFam Probable disease resistance protein At1g61300 138 303 - -
Vvi9g0591 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 411 IPR027417 -
Vvi9g0591 613 ProSiteProfiles Leucine-rich repeat profile. 559 581 IPR001611 GO:0005515
Vvi9g0591 613 SUPERFAMILY L domain-like 459 607 - -
Vvi9g0591 613 SMART LRR_typ_2 557 579 IPR003591 -
Vvi9g0591 613 SMART LRR_typ_2 580 602 IPR003591 -
Vvi9g0591 613 SMART LRR_typ_2 533 556 IPR003591 -
Vvi9g0591 613 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Vvi9g0591 613 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 39 606 - -
Vvi9g0591 613 Coils Coil 43 63 - -
Vvi9g0591 613 Gene3D - 309 396 IPR042197 -
Vvi9g0591 613 FunFam Probable disease resistance protein At1g63360 396 482 - -
Vvi9g0591 613 Pfam NB-ARC domain 161 397 IPR002182 GO:0043531
Vvi9g0591 613 PRINTS Disease resistance protein signature 555 571 - -
Vvi9g0591 613 PRINTS Disease resistance protein signature 176 191 - -
Vvi9g0591 613 PRINTS Disease resistance protein signature 344 358 - -
Vvi9g0591 613 PRINTS Disease resistance protein signature 252 266 - -
Vvi9g0591 613 FunFam Probable disease resistance protein At5g66910 308 395 - -
Vvi9g0591 613 Gene3D Ribonuclease Inhibitor 494 610 IPR032675 -
Vvi9g0591 613 Gene3D - 136 308 IPR027417 -
Vvi9g0591 613 Gene3D - 397 481 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0591 Vvi-Chr9 6009169 6011010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0591 156 371 WRKY Transcription Factor Family AT5G45050 22.467 8.34e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0591 - - vvi:100241235 1117.06