Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g0587 | ATGAGCTTTCCTACAAATACTCCTCCAGTTTTCGCCCCATACGCAGAATCCTGCGGTGATGCTCTTGAATGTTGGCCTCAATTCCCAATGAACAGAAGCTCAGAAAATTGTCCCCACATTGAAACCCCATTATTCAAGAAGCCTAAAATTTCTGAAACAGTGACCAATCTCAGGATGCCTGGATCAAATAACAAAGTCATGACTGATACTTTCTTCAAGACCCAACTCTGCATGAAATTCAGATTGGGTACTTGTATCAATGGGGATGAATGTAACTTTGCCCATGGCACTGGAGATATTCGAAGGCCTCTGCCTCATGGGCAGGAGCTTAGTTGCAAGGAGGGATATGTGGCTGGGATATGGAATCGAGACCATAGGTTAAACAGTAAAATGAAGCTATGCAGGATTTTTAGTAGAGGAGAAAAATGCCCATATGGGGAAAGGTGTAATTTTCTTCACGAAGGTTTCGAGAAGTGTAGGGAAGGTTCAGGTAGGTTTAGGGAGAGTTCTTCCATAAGCATTGGATGTACTGGATCAGCAAGGGGTTACAGGAATGGTTCTGGTCAATTGGAGTTCAAGAGGTTTGGGGATTCAAGTTTGAATGCTAATCAGGTGAATGCAAATCCAGGATTCTGGAGAACTAGGCTCTGTCACAAGTGGGAGATGTCTGGTAACTGTGCATACAGGGAGAAATGTGTCTTTGCTCATGGACAAGCTGAACTGAGGAAGCATGCAGTACAACCTGAAGGTGGGAAGGAACATGCAGCTCCAAAGACTCTCCCTTCTGCCAAGGCTGATGCATTGACCCATAAAACAGGGCCAGGAGCTACATATAACCAGCCACTTCAGGAGAAGAAGTGCGCATTCAAATGGGAAAAGCTGGGGAAGATCAATGGCATCTATGCTGATTGGATTGATGATATGCCCCTTGTGCATAGCTCTGTCAAGTAA | 951 | 0.4479 | MSFPTNTPPVFAPYAESCGDALECWPQFPMNRSSENCPHIETPLFKKPKISETVTNLRMPGSNNKVMTDTFFKTQLCMKFRLGTCINGDECNFAHGTGDIRRPLPHGQELSCKEGYVAGIWNRDHRLNSKMKLCRIFSRGEKCPYGERCNFLHEGFEKCREGSGRFRESSSISIGCTGSARGYRNGSGQLEFKRFGDSSLNANQVNANPGFWRTRLCHKWEMSGNCAYREKCVFAHGQAELRKHAVQPEGGKEHAAPKTLPSAKADALTHKTGPGATYNQPLQEKKCAFKWEKLGKINGIYADWIDDMPLVHSSVK* | 317 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g0587 | 316 | ProSiteProfiles | Zinc finger C3H1-type profile. | 71 | 98 | IPR000571 | GO:0046872 | |
Vvi9g0587 | 316 | MobiDBLite | consensus disorder prediction | 245 | 279 | - | - | |
Vvi9g0587 | 316 | SMART | c3hfinal6 | 71 | 97 | IPR000571 | GO:0046872 | |
Vvi9g0587 | 316 | SMART | c3hfinal6 | 211 | 238 | IPR000571 | GO:0046872 | |
Vvi9g0587 | 316 | SMART | c3hfinal6 | 128 | 155 | IPR000571 | GO:0046872 | |
Vvi9g0587 | 316 | ProSiteProfiles | Zinc finger C3H1-type profile. | 211 | 239 | IPR000571 | GO:0046872 | |
Vvi9g0587 | 316 | Gene3D | - | 204 | 244 | - | - | |
Vvi9g0587 | 316 | Gene3D | - | 125 | 161 | - | - | |
Vvi9g0587 | 316 | Gene3D | - | 64 | 102 | - | - | |
Vvi9g0587 | 316 | SUPERFAMILY | CCCH zinc finger | 211 | 242 | IPR036855 | GO:0046872 | |
Vvi9g0587 | 316 | SUPERFAMILY | CCCH zinc finger | 69 | 101 | IPR036855 | GO:0046872 | |
Vvi9g0587 | 316 | SUPERFAMILY | CCCH zinc finger | 128 | 154 | IPR036855 | GO:0046872 | |
Vvi9g0587 | 316 | ProSiteProfiles | Zinc finger C3H1-type profile. | 128 | 156 | IPR000571 | GO:0046872 | |
Vvi9g0587 | 316 | FunFam | zinc finger CCCH domain-containing protein 15-like | 205 | 244 | - | - | |
Vvi9g0587 | 316 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 56 | 165 | IPR045877 | GO:0003729 | |
Vvi9g0587 | 316 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 72 | 96 | IPR000571 | GO:0046872 | |
Vvi9g0587 | 316 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 212 | 238 | IPR000571 | GO:0046872 | |
Vvi9g0587 | 316 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 130 | 153 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi9g0587 | Vvi-Chr9 | 5954825 | 5956961 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi9g0587 | 208 | 242 | C3H Transcription Factor Family | AT1G68200 | 51.429 | 9.96e-06 | 44.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vvi9g0587 | zf-CCCH | 2.2e-05 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g0587 | - | - | vvi:104880257 | 676.011 |