Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0587 ATGAGCTTTCCTACAAATACTCCTCCAGTTTTCGCCCCATACGCAGAATCCTGCGGTGATGCTCTTGAATGTTGGCCTCAATTCCCAATGAACAGAAGCTCAGAAAATTGTCCCCACATTGAAACCCCATTATTCAAGAAGCCTAAAATTTCTGAAACAGTGACCAATCTCAGGATGCCTGGATCAAATAACAAAGTCATGACTGATACTTTCTTCAAGACCCAACTCTGCATGAAATTCAGATTGGGTACTTGTATCAATGGGGATGAATGTAACTTTGCCCATGGCACTGGAGATATTCGAAGGCCTCTGCCTCATGGGCAGGAGCTTAGTTGCAAGGAGGGATATGTGGCTGGGATATGGAATCGAGACCATAGGTTAAACAGTAAAATGAAGCTATGCAGGATTTTTAGTAGAGGAGAAAAATGCCCATATGGGGAAAGGTGTAATTTTCTTCACGAAGGTTTCGAGAAGTGTAGGGAAGGTTCAGGTAGGTTTAGGGAGAGTTCTTCCATAAGCATTGGATGTACTGGATCAGCAAGGGGTTACAGGAATGGTTCTGGTCAATTGGAGTTCAAGAGGTTTGGGGATTCAAGTTTGAATGCTAATCAGGTGAATGCAAATCCAGGATTCTGGAGAACTAGGCTCTGTCACAAGTGGGAGATGTCTGGTAACTGTGCATACAGGGAGAAATGTGTCTTTGCTCATGGACAAGCTGAACTGAGGAAGCATGCAGTACAACCTGAAGGTGGGAAGGAACATGCAGCTCCAAAGACTCTCCCTTCTGCCAAGGCTGATGCATTGACCCATAAAACAGGGCCAGGAGCTACATATAACCAGCCACTTCAGGAGAAGAAGTGCGCATTCAAATGGGAAAAGCTGGGGAAGATCAATGGCATCTATGCTGATTGGATTGATGATATGCCCCTTGTGCATAGCTCTGTCAAGTAA 951 0.4479 MSFPTNTPPVFAPYAESCGDALECWPQFPMNRSSENCPHIETPLFKKPKISETVTNLRMPGSNNKVMTDTFFKTQLCMKFRLGTCINGDECNFAHGTGDIRRPLPHGQELSCKEGYVAGIWNRDHRLNSKMKLCRIFSRGEKCPYGERCNFLHEGFEKCREGSGRFRESSSISIGCTGSARGYRNGSGQLEFKRFGDSSLNANQVNANPGFWRTRLCHKWEMSGNCAYREKCVFAHGQAELRKHAVQPEGGKEHAAPKTLPSAKADALTHKTGPGATYNQPLQEKKCAFKWEKLGKINGIYADWIDDMPLVHSSVK* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0587 316 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Vvi9g0587 316 MobiDBLite consensus disorder prediction 245 279 - -
Vvi9g0587 316 SMART c3hfinal6 71 97 IPR000571 GO:0046872
Vvi9g0587 316 SMART c3hfinal6 211 238 IPR000571 GO:0046872
Vvi9g0587 316 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Vvi9g0587 316 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
Vvi9g0587 316 Gene3D - 204 244 - -
Vvi9g0587 316 Gene3D - 125 161 - -
Vvi9g0587 316 Gene3D - 64 102 - -
Vvi9g0587 316 SUPERFAMILY CCCH zinc finger 211 242 IPR036855 GO:0046872
Vvi9g0587 316 SUPERFAMILY CCCH zinc finger 69 101 IPR036855 GO:0046872
Vvi9g0587 316 SUPERFAMILY CCCH zinc finger 128 154 IPR036855 GO:0046872
Vvi9g0587 316 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Vvi9g0587 316 FunFam zinc finger CCCH domain-containing protein 15-like 205 244 - -
Vvi9g0587 316 PANTHER CCCH ZINC FINGER/TIS11-RELATED 56 165 IPR045877 GO:0003729
Vvi9g0587 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 96 IPR000571 GO:0046872
Vvi9g0587 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 212 238 IPR000571 GO:0046872
Vvi9g0587 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 153 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0587 Vvi-Chr9 5954825 5956961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0587 208 242 C3H Transcription Factor Family AT1G68200 51.429 9.96e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi9g0587 zf-CCCH 2.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0587 - - vvi:104880257 676.011