Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0576 ATGTCCAGGAAGACAGCAACACACACCACTGAGAGTGATCGCAAGCATTGCAATTGTAAGAGGACCCAATGCTTGAAACTTTACTGTGACTGCCTTGCAGCAGGAGTGTATTGTACAGATTCTTGTGCATGCTCTAACTGCTTGAACAAGTCTGAAAATGAAGGCGTGGTACAAATCATTCGAGAGAAAATCGAATCCCGTGATCCACTTGCATTTGCTCCAAGGATTGTAAACCCTGACACTGACACTACTGACAATGTCCTGCAGGAAGATGGGAACTGGACGACCCCATCATCAGCCAGGCATAAGAGAGGATGCAATTGCAAGAAGTCAATGTGTCAGAAAAAATATTGTGAATGCTATCAGGTTTATATTTCTGTTGATTTAAATAGAAGGGCTGAAAGATGGGGAGTTCAAAGTCATGGGGAGCTGAACATGGGGGGAGCAGATCAATTCTCCCCAGAATGGGAAGGAATTACTGATATCAACCAAATTACTCCATTGTCTCATCCTCACTCAGGGGCAGGGGCTTCCTCAGCTTCACCCAATCCAAGAGACTTCCCTGAAGTTCTGCATGCTGAATTATATCGAGGAAATAACAGTCAGACATCAGCTGGTGCCCTTCATTGGAGCAGTTCATCCAACACTCTTGTGCCTCTGCGACATGGGAATGAGGCCCCACAAGAACTCAGTTCTGACAGTGCGCAACATGCCTTGACAAAGGATGATGATACACCAAAGATACTCAGCTCTTCCCCCAACGGACCAATGCAAGCTTGCTCATCAAATCAGAAGTGCGTGTCTCCTCCACAAATTCAATTGAAGGATACGAGTTTAAGACCTTCACCAAGCTTGACAAATGAACAGACAATCATAAGGCTGGGTACACCTTCTGTCCGTCCTTTTAGCTGGTGTAGTAATTCTAAAGATGGTATTCCTCAAATCAAAAGTCATCCCAATGACAGCACCAGCAATCAGTGA 981 0.4506 MSRKTATHTTESDRKHCNCKRTQCLKLYCDCLAAGVYCTDSCACSNCLNKSENEGVVQIIREKIESRDPLAFAPRIVNPDTDTTDNVLQEDGNWTTPSSARHKRGCNCKKSMCQKKYCECYQVYISVDLNRRAERWGVQSHGELNMGGADQFSPEWEGITDINQITPLSHPHSGAGASSASPNPRDFPEVLHAELYRGNNSQTSAGALHWSSSSNTLVPLRHGNEAPQELSSDSAQHALTKDDDTPKILSSSPNGPMQACSSNQKCVSPPQIQLKDTSLRPSPSLTNEQTIIRLGTPSVRPFSWCSNSKDGIPQIKSHPNDSTSNQ* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0576 326 SMART CXC_2 12 53 IPR033467 -
Vvi9g0576 326 SMART CXC_2 101 131 IPR033467 -
Vvi9g0576 326 MobiDBLite consensus disorder prediction 216 235 - -
Vvi9g0576 326 MobiDBLite consensus disorder prediction 305 326 - -
Vvi9g0576 326 MobiDBLite consensus disorder prediction 245 287 - -
Vvi9g0576 326 MobiDBLite consensus disorder prediction 167 187 - -
Vvi9g0576 326 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 165 309 IPR044522 GO:0003700
Vvi9g0576 326 MobiDBLite consensus disorder prediction 242 287 - -
Vvi9g0576 326 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 15 50 IPR005172 -
Vvi9g0576 326 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 103 122 IPR005172 -
Vvi9g0576 326 ProSiteProfiles CRC domain profile. 13 143 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0576 Vvi-Chr9 5833090 5835552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0576 14 76 CPP Transcription Factor Family AT3G22780 32.812 1.67e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vvi9g0576 TCR 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0576 K21776 - vvi:100855293 629.017